miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 3' -41.6 NC_005902.1 + 1145 0.7 1
Target:  5'- aCCCUUUAAgaCCUAAGcu--GUAUACa -3'
miRNA:   3'- -GGGGAAUUgaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 5044 0.74 0.999885
Target:  5'- gCCCUUUAACUCCUAAagcGUUgucaaUGAUACu- -3'
miRNA:   3'- -GGGGAAUUGAGGAUU---CAA-----AUUAUGug -5'
28296 3' -41.6 NC_005902.1 + 6175 0.67 1
Target:  5'- aCUCUUUAACUCUUAAGgcaUUAuuuaagcuAUAUACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa--AAU--------UAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 12825 0.89 0.724451
Target:  5'- aCCCUUUAACUCCUAAGUUauAUAUAUa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 13182 0.69 1
Target:  5'- aCCCUUUAACaCCUAAGcu--AUAUACc -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 15802 0.75 0.999674
Target:  5'- aUCCUUUAACUCCUAAGgcauugUUAAUGa-- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUAUgug -5'
28296 3' -41.6 NC_005902.1 + 15929 0.73 0.999974
Target:  5'- aUCCUUUAAUUCCUGGGguaucaUUAAUaACACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 16804 0.86 0.852797
Target:  5'- aCCCUUUAACUCCUAAGgcaucaUUGAUgACACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 18583 0.7 0.999999
Target:  5'- ---gUUAACUCCUAAGUU--AUAUACa -3'
miRNA:   3'- ggggAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 18749 0.78 0.9947
Target:  5'- aCCCUUUAACaCCUAAGUU--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 18856 0.68 1
Target:  5'- aCCUUUUAACaCCUAAGcuauAUACGCu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 20280 0.7 0.999999
Target:  5'- aUCCUUUAACaCCUAAGUUaacAUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAau-UAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 22436 0.75 0.999746
Target:  5'- aUCUCUUAACUCCUaAAGUgucaUUAAUaACACu -3'
miRNA:   3'- -GGGGAAUUGAGGA-UUCA----AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 23357 0.66 1
Target:  5'- aCCCUUUAAUUCUau-GUugUUAAUGCAg -3'
miRNA:   3'- -GGGGAAUUGAGGauuCA--AAUUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 23607 0.68 1
Target:  5'- aCUCUUUAACaCCUAAGcu--AUACACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 25068 0.79 0.988881
Target:  5'- cCCCUUUAACUCCUAAagcguuGUUgacGAUACAUa -3'
miRNA:   3'- -GGGGAAUUGAGGAUU------CAAa--UUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 25119 0.67 1
Target:  5'- aCCCUUUAACUCUaugcuauauAUACACa -3'
miRNA:   3'- -GGGGAAUUGAGGauucaaau-UAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 26205 0.89 0.735231
Target:  5'- aCCCCUUAACUCCUAAGgcaucAUugACg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaau-UAugUG- -5'
28296 3' -41.6 NC_005902.1 + 26429 0.69 1
Target:  5'- aCCCUUUAAUUUCUAAGgcaUUAucaaugACACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa--AAUua----UGUG- -5'
28296 3' -41.6 NC_005902.1 + 27730 0.68 1
Target:  5'- uUCUUUAACUCCUAAGgcaucaucgccgaugGCACa -3'
miRNA:   3'- gGGGAAUUGAGGAUUCaaauua---------UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.