miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 3' -41.6 NC_005902.1 + 184861 0.68 1
Target:  5'- aCCCUUUAACaCCUAAGcuguAUAUAUg -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 184444 0.73 0.999952
Target:  5'- aCCCUUUAACUCUUAAGguguugUUAAUGa-- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUAUgug -5'
28296 3' -41.6 NC_005902.1 + 183213 0.66 1
Target:  5'- uUCUUUAGCUUUagAAGUUUcaAAUACACa -3'
miRNA:   3'- gGGGAAUUGAGGa-UUCAAA--UUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 181315 0.66 1
Target:  5'- aCCCCUU-AUUCCUAAG----AUAUAUu -3'
miRNA:   3'- -GGGGAAuUGAGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 181227 0.85 0.892627
Target:  5'- gCCUUUAACUCCUAAGUU--AUAUACu -3'
miRNA:   3'- gGGGAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 180751 0.8 0.981362
Target:  5'- aCCCCUUAAUUCCUAAGgugUUAucaACAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa--AAUua-UGUg -5'
28296 3' -41.6 NC_005902.1 + 177325 0.74 0.999849
Target:  5'- aUCCUUUAACaCCUAAGUUUAuuuGUAUAUa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAAU---UAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 175938 0.75 0.999641
Target:  5'- aCCCUUUAACUCCUAAGguaucauCAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauuauGUg -5'
28296 3' -41.6 NC_005902.1 + 175516 0.67 1
Target:  5'- aCCCUUUAACUCUUAAGa--------- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauuaugug -5'
28296 3' -41.6 NC_005902.1 + 174824 0.66 1
Target:  5'- uUCCUUAACUCUUAAGgcaucaucaaugACAUa -3'
miRNA:   3'- gGGGAAUUGAGGAUUCaaauua------UGUG- -5'
28296 3' -41.6 NC_005902.1 + 173729 0.67 1
Target:  5'- aCCCUUUAACUUCUuu-----AUGCACc -3'
miRNA:   3'- -GGGGAAUUGAGGAuucaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 173178 1.05 0.167365
Target:  5'- aCCCCUUAACUCCUAAGUUauAUACACg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 172815 0.67 1
Target:  5'- aCCCUUUAACaCCUAAGcu--AUAUAUg -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 172279 0.7 1
Target:  5'- uCCCCUUuugauaAACUCCUAcagUUAAUaaACACc -3'
miRNA:   3'- -GGGGAA------UUGAGGAUucaAAUUA--UGUG- -5'
28296 3' -41.6 NC_005902.1 + 169123 0.72 0.999991
Target:  5'- aCCCUUUAACaCCUAAgcuauauauuuGUUUGAUAUGCu -3'
miRNA:   3'- -GGGGAAUUGaGGAUU-----------CAAAUUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 167434 0.72 0.999993
Target:  5'- aCCUuuUUAACUCCUAAGUU--AUAUAa -3'
miRNA:   3'- gGGG--AAUUGAGGAUUCAAauUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 167155 0.69 1
Target:  5'- uCCCUUUAACaCCUAAGcu--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 166074 0.67 1
Target:  5'- aCCCUUUAACUUCUAAGa--------- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauuaugug -5'
28296 3' -41.6 NC_005902.1 + 165887 0.71 0.999997
Target:  5'- aCCCUUUAACaCCUAAGcu--AUAUACg -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 165879 0.75 0.999771
Target:  5'- aCCCUUUAACUUCUAAGgugucauuaACACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauua---UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.