miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 5' -38 NC_005902.1 + 17681 0.66 1
Target:  5'- --uUAUAUAAgcCUUAGGGuUUAAAGGa -3'
miRNA:   3'- uauAUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 7677 0.66 1
Target:  5'- uUGUAUAUAGCUUAGG---UAGAGu- -3'
miRNA:   3'- uAUAUAUAUUGAAUCCucaAUUUCcc -5'
28296 5' -38 NC_005902.1 + 100015 0.67 1
Target:  5'- uAUAUaAUAUAGCUUAGGuGUUAAu--- -3'
miRNA:   3'- -UAUA-UAUAUUGAAUCCuCAAUUuccc -5'
28296 5' -38 NC_005902.1 + 95549 0.67 1
Target:  5'- -cAUcgAUGAugcCUUAaGAGUUAAAGGGu -3'
miRNA:   3'- uaUAuaUAUU---GAAUcCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 120289 0.67 1
Target:  5'- -cAUAUAUAGUUcAGGuGUUAAAGGa -3'
miRNA:   3'- uaUAUAUAUUGAaUCCuCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 51715 0.67 1
Target:  5'- uUGUAUAU-GCUUAaauGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAuUGAAUccuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 85761 0.66 1
Target:  5'- aAUAaGUAUAAgcCUUAGGAuUUAAAGGa -3'
miRNA:   3'- -UAUaUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 1525 0.66 1
Target:  5'- ---aGUAUAAgcCUUAGGAuUUAAAGGa -3'
miRNA:   3'- uauaUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 13316 0.66 1
Target:  5'- -cAUAUAUAACUUAGGuauuauaaAGUUAaccccuAAGGc -3'
miRNA:   3'- uaUAUAUAUUGAAUCC--------UCAAU------UUCCc -5'
28296 5' -38 NC_005902.1 + 46298 0.66 1
Target:  5'- ---aGUAUAAgcCUUAGGAuUUAAAGGa -3'
miRNA:   3'- uauaUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 97749 0.66 1
Target:  5'- ---cAUAUAGCUUAGGuGUUAAu--- -3'
miRNA:   3'- uauaUAUAUUGAAUCCuCAAUUuccc -5'
28296 5' -38 NC_005902.1 + 104186 0.66 1
Target:  5'- -----aAUAACgccuUAGGAGUUAAAGa- -3'
miRNA:   3'- uauauaUAUUGa---AUCCUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 24258 0.66 1
Target:  5'- uUGUAUcaucaAUGACaccUUAGGuGUUAAAGGa -3'
miRNA:   3'- uAUAUA-----UAUUG---AAUCCuCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 117106 0.66 1
Target:  5'- uUGUAUAUAGCUUAaGuGUUAAAaGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUcCuCAAUUUcCC- -5'
28296 5' -38 NC_005902.1 + 5159 0.66 1
Target:  5'- ---gAUAUuGCUUAGauGUUAAAGGGu -3'
miRNA:   3'- uauaUAUAuUGAAUCcuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 107964 0.66 1
Target:  5'- -cAUAUAUAGCUUAaGGGUUAAAa-- -3'
miRNA:   3'- uaUAUAUAUUGAAUcCUCAAUUUccc -5'
28296 5' -38 NC_005902.1 + 85815 0.66 1
Target:  5'- ---aAUAauGCUUuGGGGUUAAAGGu -3'
miRNA:   3'- uauaUAUauUGAAuCCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 90589 0.66 1
Target:  5'- -----cAUAcCUUAaGAGUUAAGGGGu -3'
miRNA:   3'- uauauaUAUuGAAUcCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 103857 0.66 1
Target:  5'- -----gAUAACaauauGGAGUUAAAGGa -3'
miRNA:   3'- uauauaUAUUGaau--CCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 124573 0.66 1
Target:  5'- uUAUAUAUAAUUUAGuguuaaaGAGUUAAGGc- -3'
miRNA:   3'- uAUAUAUAUUGAAUC-------CUCAAUUUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.