miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 5' -40.6 NC_005905.1 + 20050 1.16 0.023105
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17802 1.16 0.023105
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19655 1.16 0.023105
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19875 1.16 0.023105
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 22049 1.11 0.049713
Target:  5'- gCCAAGUUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 22139 1.11 0.049713
Target:  5'- gCCAAGUUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17847 1.1 0.054662
Target:  5'- gCCGAGUUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 8699 1.06 0.093052
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 8808 1.06 0.093052
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 19765 1.06 0.084786
Target:  5'- gCCAAGCUAGCcUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGaAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 9027 1.06 0.093052
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 21824 1 0.175734
Target:  5'- aCCAAGUUAGCUUCGACAAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 19610 1 0.175734
Target:  5'- gCCAAGCUAGCUUC-ACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGcUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 9072 1 0.191886
Target:  5'- gCCAAGCUAGCUUCGACAAAUcucgAUCa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaa-UAG- -5'
28301 5' -40.6 NC_005905.1 + 17233 1 0.180979
Target:  5'- gCCGAGUUAGCUUCGACAAAUUUgAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5'
28301 5' -40.6 NC_005905.1 + 22004 1 0.191886
Target:  5'- aCCAAGUUAGCUUCGACGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 21959 0.99 0.209326
Target:  5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 21869 0.99 0.209326
Target:  5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 21914 0.99 0.209326
Target:  5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 20005 0.99 0.203366
Target:  5'- gCCAAGCUAGCUUCGACAAA---UAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUaaaAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.