miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 5' -40.6 NC_005905.1 + 8829 0.66 1
Target:  5'- cCCAAGCcGGUUUgGACucGGUaaaaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCGAAgCUGu-UUA----AAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19830 0.89 0.589421
Target:  5'- gCCAAGUUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17298 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 20050 1.16 0.023105
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49212 0.67 1
Target:  5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49257 0.67 1
Target:  5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49392 0.67 1
Target:  5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49437 0.67 1
Target:  5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 22179 0.69 0.999996
Target:  5'- cCCAGGCcGGCUUgGGuCGAAUga-GUCg -3'
miRNA:   3'- -GGUUCGaUCGAAgCU-GUUUAaaaUAG- -5'
28301 5' -40.6 NC_005905.1 + 21779 0.88 0.613246
Target:  5'- gCCAAGUUAGCUUCGACGAAgcu--UCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUaaaauAG- -5'
28301 5' -40.6 NC_005905.1 + 61112 0.71 0.999903
Target:  5'- aCAuauAGCaauaGGCUUCGGCGAugUUUAUCa -3'
miRNA:   3'- gGU---UCGa---UCGAAGCUGUUuaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 9003 0.68 1
Target:  5'- cCCAAGCcgGGCUggacUCGAUAAAccuaaucUUAUCu -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUGUUUaa-----AAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49077 0.67 1
Target:  5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17912 0.8 0.943183
Target:  5'- gCCAAGCUAGCUcUGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAaGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 49122 0.67 1
Target:  5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 8784 0.68 1
Target:  5'- cCCAAGCcgGGCUggacUCGAUAAAccuaaucUUAUCu -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUGUUUaa-----AAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17188 0.8 0.937727
Target:  5'- gCCAAGCUAGCUUCaACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGcUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 20175 0.91 0.489895
Target:  5'- gCCAAGCUAGCcUCGACAAAUcucgauaagauuaggUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGaAGCUGUUUA---------------AAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49167 0.67 1
Target:  5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49302 0.67 1
Target:  5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.