Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28302 | 5' | -61.5 | NC_005905.1 | + | 22073 | 0.66 | 0.477891 |
Target: 5'- uUCGAc-CCAaGCCGGCcUGGGCUAGa -3' miRNA: 3'- uAGCUcaGGUcCGGCCGaACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 49366 | 0.66 | 0.421668 |
Target: 5'- uAUCaAGUCUAGaCCGGCUUGaGCCGAc -3' miRNA: 3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 49096 | 0.67 | 0.395091 |
Target: 5'- uAUCaAGUCUAGaCCGGCUUGaGCCAAc -3' miRNA: 3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 49141 | 0.67 | 0.395091 |
Target: 5'- uAUCaAGUCUAGaCCGGCUUGaGCCAAc -3' miRNA: 3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 49276 | 0.67 | 0.395091 |
Target: 5'- uAUCaAGUCUAGaCCGGCUUGaGCCAAc -3' miRNA: 3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 49231 | 0.67 | 0.395091 |
Target: 5'- uAUCaAGUCUAGaCCGGCUUGaGCCAAc -3' miRNA: 3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17869 | 0.68 | 0.345295 |
Target: 5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17934 | 0.69 | 0.286173 |
Target: 5'- ---uAGUCUAGGCUGGCUUGGGagGAa -3' miRNA: 3'- uagcUCAGGUCCGGCCGAACCCggUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17887 | 0.7 | 0.272697 |
Target: 5'- -cCGAGUUCAGGCCGGUUUcuGUCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAAccCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 22159 | 0.71 | 0.229531 |
Target: 5'- -aUGAGUCgAGGCCuGCUUuGGCCAAg -3' miRNA: 3'- uaGCUCAGgUCCGGcCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21744 | 0.72 | 0.192279 |
Target: 5'- -gCGAGUaUAGGCCGGCUUGaGCCGu -3' miRNA: 3'- uaGCUCAgGUCCGGCCGAACcCGGUu -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17930 | 0.75 | 0.119934 |
Target: 5'- ---aAGUCCAGuCCGGUUUGGGCCAAg -3' miRNA: 3'- uagcUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17475 | 0.76 | 0.096682 |
Target: 5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17585 | 0.76 | 0.096682 |
Target: 5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17365 | 0.76 | 0.096682 |
Target: 5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21844 | 0.78 | 0.06776 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGaaCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACccGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17145 | 0.8 | 0.04997 |
Target: 5'- uAUCGAGUCCAGcCCGGCUUGaGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 22069 | 0.8 | 0.047264 |
Target: 5'- -cCGAGUUUAGGCCGGCUUGaGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21799 | 0.81 | 0.04111 |
Target: 5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 22186 | 0.82 | 0.033794 |
Target: 5'- uAUCuAGcCCAGGCCGGCUUGGGUCGAa -3' miRNA: 3'- -UAGcUCaGGUCCGGCCGAACCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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