miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 3' -55.2 NC_005905.1 + 49038 0.67 0.791923
Target:  5'- --cCGGCUUGaGCCGAcCgAGCUUCGg -3'
miRNA:   3'- ccaGCCGAACcCGGUUcGaUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 22166 0.8 0.17694
Target:  5'- gGGUCGaaugagucgaggccuGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCAGC---------------CGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 22106 0.95 0.015124
Target:  5'- aGGcCGGUUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 22061 0.87 0.056588
Target:  5'- aGGcCGGCUUGaGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACcCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 22014 0.74 0.378194
Target:  5'- -uUCGGUUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccAGCCGAACccGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21971 1 0.007542
Target:  5'- aGGcCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21926 1 0.007542
Target:  5'- aGGcCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21881 1 0.007542
Target:  5'- aGGcCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21836 0.8 0.170506
Target:  5'- aGGcCGGCUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACccGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21791 0.88 0.049105
Target:  5'- aGGcCGGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 20184 0.92 0.025425
Target:  5'- --cCGGCUUGGGCCAAGCUAGCcUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGaAGC- -5'
28304 3' -55.2 NC_005905.1 + 20127 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 20062 1.12 0.001105
Target:  5'- aGGUCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 20014 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19952 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19887 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19839 0.95 0.015568
Target:  5'- --cCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19777 0.97 0.01235
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCcUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGaAGC- -5'
28304 3' -55.2 NC_005905.1 + 19732 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19667 0.99 0.008977
Target:  5'- aGGUCGuCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCcGAACCCGGUUCGAUCGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.