miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 8723 0.66 0.901671
Target:  5'- uUGGcCCAAGCcGGCCUgGACAc---- -3'
miRNA:   3'- -ACCcGGUUCGaUCGGAgCUGUuuaga -5'
28305 3' -53.1 NC_005905.1 + 17192 0.91 0.037854
Target:  5'- uUGGGCCAAGCUAGCUUCaACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGcUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21918 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 20179 1.08 0.002945
Target:  5'- uUGGGCCAAGCUAGCCUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21832 0.73 0.514575
Target:  5'- cGGcuugaaCCAAGUUAGCUUCGACAAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19505 0.75 0.405579
Target:  5'- uUGGaCCAAGCUAGCCUgGAUAAAa-- -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAgCUGUUUaga -5'
28305 3' -53.1 NC_005905.1 + 21781 0.8 0.218338
Target:  5'- -uGGCCAAGUUAGCUUCGACGAAg-- -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUaga -5'
28305 3' -53.1 NC_005905.1 + 22053 0.8 0.212646
Target:  5'- uUGaGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17565 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17916 0.91 0.03898
Target:  5'- uUGGGCCAAGCUAGCUcUGACAAAUCa -3'
miRNA:   3'- -ACCCGGUUCGAUCGGaGCUGUUUAGa -5'
28305 3' -53.1 NC_005905.1 + 19614 0.85 0.095576
Target:  5'- uUGGGCCAAGCUAGCUUC-ACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGcUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17455 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8999 0.67 0.864308
Target:  5'- --aGCCGGGCUGGaCUCGAUAAAcCUa -3'
miRNA:   3'- accCGGUUCGAUCgGAGCUGUUUaGA- -5'
28305 3' -53.1 NC_005905.1 + 17761 0.89 0.052205
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8788 0.68 0.811632
Target:  5'- uUGGcccaaGCCGGGCUGGaCUCGAUAAAcCUa -3'
miRNA:   3'- -ACC-----CGGUUCGAUCgGAGCUGUUUaGA- -5'
28305 3' -53.1 NC_005905.1 + 17345 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17631 0.89 0.052205
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21873 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22012 0.72 0.546406
Target:  5'- cGGuuugaaCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17851 0.79 0.230114
Target:  5'- uUGuGCCGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.