miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28311 5' -53.4 NC_005905.1 + 21799 0.66 0.887284
Target:  5'- -cCGAGUUUaGGCCGGCUUuGGCCa- -3'
miRNA:   3'- uaGUUUAGAcCUGGCCGAAcUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 17779 0.67 0.855986
Target:  5'- uAUCGAAUCcaGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5'
28311 5' -53.4 NC_005905.1 + 17649 0.67 0.855986
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5'
28311 5' -53.4 NC_005905.1 + 19523 0.67 0.855986
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5'
28311 5' -53.4 NC_005905.1 + 8896 0.67 0.847564
Target:  5'- uAUCGAGUCcaGcCCGGCUUGGGCaGAg -3'
miRNA:   3'- -UAGUUUAGacCuGGCCGAACUCGgCU- -5'
28311 5' -53.4 NC_005905.1 + 9052 0.67 0.811726
Target:  5'- -cCGAGUCcaGG-UCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGa-CCuGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8614 0.68 0.792649
Target:  5'- -cCGuGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUuUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 17869 0.68 0.762819
Target:  5'- uAUCGAGUUUaGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGUUUAGAcCuGGCCGAACuCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 21844 0.7 0.678259
Target:  5'- -cCGAGUCUaGGCCGGCUUGAaCCa- -3'
miRNA:   3'- uaGUUUAGAcCUGGCCGAACUcGGcu -5'
28311 5' -53.4 NC_005905.1 + 22191 0.7 0.656465
Target:  5'- aAUUuuAUCUagcccaGGCCGGCUUGGGUCGAa -3'
miRNA:   3'- -UAGuuUAGAc-----CUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 8724 0.7 0.656465
Target:  5'- -cCGAGUCcaaACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGaccUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8677 0.71 0.590862
Target:  5'- uAUCGAGUCcaGcCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCuGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 20072 0.72 0.569174
Target:  5'- uAUCGAGUCcaGG-UCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGa-CCuGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8833 0.75 0.416546
Target:  5'- -cCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 21744 0.75 0.407253
Target:  5'- -gCGAGUauaGGCCGGCUUGAGCCGu -3'
miRNA:   3'- uaGUUUAgacCUGGCCGAACUCGGCu -5'
28311 5' -53.4 NC_005905.1 + 19588 0.75 0.389062
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaccUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11290 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11615 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11745 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11810 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.