Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28312 | 3' | -47.5 | NC_005905.1 | + | 14665 | 0.66 | 0.994087 |
Target: 5'- aGCCGAGCaGGCUuuaUCGaACGAAUUggaCAGa -3' miRNA: 3'- -CGGUUCGaUCGA---AGC-UGUUUAGa--GUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17766 | 0.66 | 0.994087 |
Target: 5'- aGCCGAGCUAaacUCGAUAAaccuaaucguAUCUCAu -3' miRNA: 3'- -CGGUUCGAUcgaAGCUGUU----------UAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 10756 | 0.68 | 0.976546 |
Target: 5'- aUUGAGUUAGCUUCGACGAAauuaUCAc -3' miRNA: 3'- cGGUUCGAUCGAAGCUGUUUag--AGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8999 | 0.68 | 0.973673 |
Target: 5'- aGCCGGGCUGGacUCGAUAaaccuAAUCUUAu -3' miRNA: 3'- -CGGUUCGAUCgaAGCUGU-----UUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17041 | 0.68 | 0.973673 |
Target: 5'- aGCCGGGCUGGacUCGAUAaacauAAUCUUAu -3' miRNA: 3'- -CGGUUCGAUCgaAGCUGU-----UUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22194 | 0.7 | 0.935742 |
Target: 5'- gGCCAAGCcGGUUUaaauaCGACAAAUC-CAGg -3' miRNA: 3'- -CGGUUCGaUCGAA-----GCUGUUUAGaGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8780 | 0.71 | 0.911262 |
Target: 5'- aGCCGGGCUGGacUCGAUAAaccuaaucuuAUCUCAu -3' miRNA: 3'- -CGGUUCGAUCgaAGCUGUU----------UAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17151 | 0.71 | 0.911262 |
Target: 5'- aGCCGGGCUGGacUCGAUAAacauaaucuuAUCUCAu -3' miRNA: 3'- -CGGUUCGAUCgaAGCUGUU----------UAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8589 | 0.73 | 0.829935 |
Target: 5'- aCCGAuuUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- cGGUUcgAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8917 | 0.79 | 0.510932 |
Target: 5'- gGCaGAGUUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- -CGgUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17906 | 0.81 | 0.407354 |
Target: 5'- uGUCAAGUUAGCUUUGACGAGUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 19611 | 0.84 | 0.309867 |
Target: 5'- gGCCAAGCUAGCUUC-ACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGcUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17913 | 0.84 | 0.301941 |
Target: 5'- gGCCAAGCUAGCUcUGACAAAUCaCGAu -3' miRNA: 3'- -CGGUUCGAUCGAaGCUGUUUAGaGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17344 | 0.85 | 0.257661 |
Target: 5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17454 | 0.85 | 0.257661 |
Target: 5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17564 | 0.85 | 0.257661 |
Target: 5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11829 | 0.85 | 0.257661 |
Target: 5'- gGCCAAGCUAGCUUCGAUAAGUa---- -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAgaguu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 21780 | 0.86 | 0.244129 |
Target: 5'- gGCCAAGUUAGCUUCGACGAAgcuUCGAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUag-AGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22004 | 0.86 | 0.224942 |
Target: 5'- aCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- cGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 21824 | 0.87 | 0.207051 |
Target: 5'- aCCAAGUUAGCUUCGACAAGUUUUAc -3' miRNA: 3'- cGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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