miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 3' -47.5 NC_005905.1 + 17766 0.66 0.994087
Target:  5'- aGCCGAGCUAaacUCGAUAAaccuaaucguAUCUCAu -3'
miRNA:   3'- -CGGUUCGAUcgaAGCUGUU----------UAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 14665 0.66 0.994087
Target:  5'- aGCCGAGCaGGCUuuaUCGaACGAAUUggaCAGa -3'
miRNA:   3'- -CGGUUCGaUCGA---AGC-UGUUUAGa--GUU- -5'
28312 3' -47.5 NC_005905.1 + 10756 0.68 0.976546
Target:  5'- aUUGAGUUAGCUUCGACGAAauuaUCAc -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUag--AGUu -5'
28312 3' -47.5 NC_005905.1 + 17041 0.68 0.973673
Target:  5'- aGCCGGGCUGGacUCGAUAaacauAAUCUUAu -3'
miRNA:   3'- -CGGUUCGAUCgaAGCUGU-----UUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 8999 0.68 0.973673
Target:  5'- aGCCGGGCUGGacUCGAUAaaccuAAUCUUAu -3'
miRNA:   3'- -CGGUUCGAUCgaAGCUGU-----UUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 22194 0.7 0.935742
Target:  5'- gGCCAAGCcGGUUUaaauaCGACAAAUC-CAGg -3'
miRNA:   3'- -CGGUUCGaUCGAA-----GCUGUUUAGaGUU- -5'
28312 3' -47.5 NC_005905.1 + 17151 0.71 0.911262
Target:  5'- aGCCGGGCUGGacUCGAUAAacauaaucuuAUCUCAu -3'
miRNA:   3'- -CGGUUCGAUCgaAGCUGUU----------UAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 8780 0.71 0.911262
Target:  5'- aGCCGGGCUGGacUCGAUAAaccuaaucuuAUCUCAu -3'
miRNA:   3'- -CGGUUCGAUCgaAGCUGUU----------UAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 8589 0.73 0.829935
Target:  5'- aCCGAuuUAGCUUCGACAAAUUUUAc -3'
miRNA:   3'- cGGUUcgAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 8917 0.79 0.510932
Target:  5'- gGCaGAGUUAGCUUCGACAAAUUUUAc -3'
miRNA:   3'- -CGgUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17906 0.81 0.407354
Target:  5'- uGUCAAGUUAGCUUUGACGAGUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 19611 0.84 0.309867
Target:  5'- gGCCAAGCUAGCUUC-ACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGcUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17913 0.84 0.301941
Target:  5'- gGCCAAGCUAGCUcUGACAAAUCaCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAaGCUGUUUAGaGUU- -5'
28312 3' -47.5 NC_005905.1 + 11829 0.85 0.257661
Target:  5'- gGCCAAGCUAGCUUCGAUAAGUa---- -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAgaguu -5'
28312 3' -47.5 NC_005905.1 + 17564 0.85 0.257661
Target:  5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5'
28312 3' -47.5 NC_005905.1 + 17454 0.85 0.257661
Target:  5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5'
28312 3' -47.5 NC_005905.1 + 17344 0.85 0.257661
Target:  5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5'
28312 3' -47.5 NC_005905.1 + 21780 0.86 0.244129
Target:  5'- gGCCAAGUUAGCUUCGACGAAgcuUCGAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUag-AGUU- -5'
28312 3' -47.5 NC_005905.1 + 22004 0.86 0.224942
Target:  5'- aCCAAGUUAGCUUCGACGAGUUUUAc -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 21824 0.87 0.207051
Target:  5'- aCCAAGUUAGCUUCGACAAGUUUUAc -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.