miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 5' -49.6 NC_005905.1 + 8938 0.66 0.988626
Target:  5'- ------uUUUAcCGAGUCCAGgCCGGc -3'
miRNA:   3'- cuaauccAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 8828 0.66 0.988626
Target:  5'- ------uUUUAcCGAGUCCAGgCCGGc -3'
miRNA:   3'- cuaauccAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11804 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11089 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11154 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11219 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11284 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11349 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11414 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11479 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11544 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11609 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11674 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11739 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17938 0.67 0.967143
Target:  5'- -----aGUUUAUaaAGUCCAGUCCGGu -3'
miRNA:   3'- cuaaucCAAAUAgcUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 20202 0.69 0.920261
Target:  5'- ---cAGcg-UAUCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaUCcaaAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 22029 0.7 0.914061
Target:  5'- ------uUUUAUCGAGUCUAGUUCGGu -3'
miRNA:   3'- cuaauccAAAUAGCUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 22119 0.71 0.878971
Target:  5'- ------uUUUAUCGAGUCUAGgCCGGu -3'
miRNA:   3'- cuaauccAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 19635 0.72 0.837503
Target:  5'- ------uUUUAUCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaauccAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 19855 0.72 0.837503
Target:  5'- ------uUUUAUCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaauccAAAUAGCUCAGGUCgGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.