miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 9010 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 22064 0.66 0.854063
Target:  5'- cUCGA--CUcAUUCGaCCCAAGCCGGc -3'
miRNA:   3'- cAGCUucGAuUGAGCcGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17709 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 19892 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 20132 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 19957 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 22156 0.66 0.838188
Target:  5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3'
miRNA:   3'- -CAGCUUCG---------------AUUG--------------AGC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8810 0.67 0.807981
Target:  5'- ---cAAGCUAGCUucgacaaauuuuacCGaGUCCAGGCCGGc -3'
miRNA:   3'- cagcUUCGAUUGA--------------GC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19763 0.67 0.779653
Target:  5'- ---cAAGCUAGCcucgacaaauuuuaUCGaGUCCAGGCCGGc -3'
miRNA:   3'- cagcUUCGAUUG--------------AGC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 54451 0.67 0.772847
Target:  5'- cGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCGGu -3'
miRNA:   3'- -CAgCUUCGAU---------UGAGCCGGg-UUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17868 0.67 0.772847
Target:  5'- aUCGAGuuUAGCUCGGCUUguGCCGa -3'
miRNA:   3'- cAGCUUcgAUUGAGCCGGGuuCGGCc -5'
28319 5' -55 NC_005905.1 + 19608 0.68 0.741948
Target:  5'- ---cAAGCUAGCuucacaaauuuuaUCGaGUCCAAGCCGGc -3'
miRNA:   3'- cagcUUCGAUUG-------------AGC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17539 0.68 0.712128
Target:  5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 17319 0.68 0.712128
Target:  5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 17209 0.68 0.712128
Target:  5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 17429 0.68 0.712128
Target:  5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 18009 0.71 0.574226
Target:  5'- cGUCaAAGCUAACUugacagaaacCGGCCUgaacucgguuuAAGCCGGc -3'
miRNA:   3'- -CAGcUUCGAUUGA----------GCCGGG-----------UUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17027 0.78 0.223001
Target:  5'- ------aCUAACUCGGCUCAAGCCGGg -3'
miRNA:   3'- cagcuucGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 21902 0.8 0.181296
Target:  5'- cGUCGAAGCUAACUUGGUUCAAaCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUcGGCc -5'
28319 5' -55 NC_005905.1 + 9234 0.8 0.172008
Target:  5'- -----uGCUAACUCuGCCCAAGCCGGg -3'
miRNA:   3'- cagcuuCGAUUGAGcCGGGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.