Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28319 | 5' | -55 | NC_005905.1 | + | 54451 | 0.67 | 0.772847 |
Target: 5'- cGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCGGu -3' miRNA: 3'- -CAgCUUCGAU---------UGAGCCGGg-UUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49332 | 0.87 | 0.062453 |
Target: 5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49287 | 0.87 | 0.062453 |
Target: 5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49242 | 0.83 | 0.111865 |
Target: 5'- aUUGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49197 | 0.87 | 0.062453 |
Target: 5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49152 | 0.83 | 0.111865 |
Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49107 | 0.83 | 0.111865 |
Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49062 | 0.87 | 0.062453 |
Target: 5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49017 | 0.83 | 0.111865 |
Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 48972 | 0.83 | 0.111865 |
Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 48928 | 0.84 | 0.094864 |
Target: 5'- -cCGAAGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- caGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 22156 | 0.66 | 0.838188 |
Target: 5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3' miRNA: 3'- -CAGCUUCG---------------AUUG--------------AGC-CGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 22064 | 0.66 | 0.854063 |
Target: 5'- cUCGA--CUcAUUCGaCCCAAGCCGGc -3' miRNA: 3'- cAGCUucGAuUGAGCcGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 22036 | 0.84 | 0.097518 |
Target: 5'- uGUCGAAGCUAACUUGGCCaaagCAGGCCu- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGG----GUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 21991 | 0.94 | 0.020576 |
Target: 5'- cGUCGAAGCUAACUUGGCCCAAaCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUcGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 21947 | 0.92 | 0.030731 |
Target: 5'- uGUCGAAGCU-ACUUGGCUCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAuUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 21902 | 0.8 | 0.181296 |
Target: 5'- cGUCGAAGCUAACUUGGUUCAAaCCGa -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUcGGCc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 21857 | 1.06 | 0.003057 |
Target: 5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 21812 | 1.06 | 0.003057 |
Target: 5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 21767 | 1.06 | 0.003057 |
Target: 5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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