miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 17998 0.66 0.824193
Target:  5'- aCUUGaCagAAaCCGGCCUGAACUCGg -3'
miRNA:   3'- cGAACcGggUUcGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21843 0.66 0.81517
Target:  5'- ---cGaGUCUAGGCCGGCUUGAAC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 17415 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17305 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17195 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcaacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17525 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 9065 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17759 0.67 0.787041
Target:  5'- ---cGGCaCAAGCCGaGC-UAAACUCGa -3'
miRNA:   3'- cgaaCCGgGUUCGGC-CGgAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 18044 0.67 0.777344
Target:  5'- cCUUccuCCCAAGCCaGCCUAGACUa- -3'
miRNA:   3'- cGAAcc-GGGUUCGGcCGGAUUUGAgc -5'
28323 3' -55 NC_005905.1 + 9008 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19739 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 17711 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 8789 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 8834 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 8615 0.69 0.674241
Target:  5'- ---cGuGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19959 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 20134 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19894 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19585 0.69 0.642095
Target:  5'- ---cGaGUCCAAGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 17646 0.7 0.620605
Target:  5'- ---cGaGUCCAGGCCGGCUUGGAC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.