miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 20079 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20077 0.73 0.3212
Target:  5'- -aGGUUUaucGaGUCCAGGUCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20019 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20013 0.71 0.386872
Target:  5'- -cGGCUUGGgCCAAGCUaGCUUcGACa -3'
miRNA:   3'- gaUCGAACCgGGUUCGGcCGAAcCUG- -5'
28324 3' -57.2 NC_005905.1 + 19967 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19955 0.81 0.086252
Target:  5'- gCUAGC-UGGCCCAAGCCGaCcUGGACu -3'
miRNA:   3'- -GAUCGaACCGGGUUCGGCcGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19910 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19902 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19870 0.71 0.401922
Target:  5'- gCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19845 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19792 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19780 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19760 0.75 0.219661
Target:  5'- gCUAGCcUcgacaaauuuuaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGaA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19735 0.88 0.03109
Target:  5'- gCUAaCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19670 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19650 0.71 0.401922
Target:  5'- gCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19625 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19605 0.83 0.064988
Target:  5'- gCUAGCUUcacaaauuuuaucGaGUCCAAGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA-------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19560 0.78 0.145247
Target:  5'- gCUAGCUUGGCCCAAGaCGaCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCgGCcGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19528 0.78 0.137616
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGACc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.