Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 3' | -57.2 | NC_005905.1 | + | 21819 | 0.79 | 0.120124 |
Target: 5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3' miRNA: 3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 21774 | 0.79 | 0.120124 |
Target: 5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3' miRNA: 3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19910 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19515 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 20019 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19845 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19780 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19670 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19625 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17597 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 20079 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17532 | 0.97 | 0.006523 |
Target: 5'- gCUAGCUUGGUCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 8595 | 0.8 | 0.103857 |
Target: 5'- uUAGCUUcgacaaauuuuaccGuGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19955 | 0.81 | 0.086252 |
Target: 5'- gCUAGC-UGGCCCAAGCCGaCcUGGACu -3' miRNA: 3'- -GAUCGaACCGGGUUCGGCcGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 8813 | 0.82 | 0.072319 |
Target: 5'- gCUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- -GAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17817 | 0.83 | 0.068946 |
Target: 5'- gCUAGCUUGGCCCAAaCCGGacUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUcGGCCgaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17707 | 0.86 | 0.041391 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCc----- -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaaccug -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19735 | 0.88 | 0.03109 |
Target: 5'- gCUAaCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUcGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17662 | 0.94 | 0.011321 |
Target: 5'- gCUAGCUUGGUCCAAGCCGGCcUGGAUu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19405 | 0.97 | 0.006523 |
Target: 5'- gCUAGCUUGGUCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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