miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 11806 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11221 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11156 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11351 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11416 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11286 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11481 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11611 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11546 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11676 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11741 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11091 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 22111 0.66 0.854708
Target:  5'- -aGUCuAGGCcGGUUUGGgCCAAGUUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 22156 0.66 0.846207
Target:  5'- -aGUCGAGGCcuGCuUUGGCCaaguuAGCUu -3'
miRNA:   3'- aaCAGCUUCGauCG-AACCGGgu---UCGG- -5'
28324 5' -53.9 NC_005905.1 + 49242 0.68 0.760735
Target:  5'- --aUUGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17778 0.68 0.729477
Target:  5'- --aUCGAauccaGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- aacAGCU-----UCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 48928 0.69 0.697344
Target:  5'- ---cCGAAGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacaGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8678 0.69 0.66464
Target:  5'- --aUCGAguccAGCccGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aacAGCU----UCGa-UCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21931 0.7 0.609662
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21886 0.7 0.609662
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.