miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 17819 0.67 0.599452
Target:  5'- aGUUUAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 22111 0.67 0.588927
Target:  5'- aGUCUAGGCCGGUUUGGGCcaaguuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17250 0.68 0.536948
Target:  5'- aGUCCAGcCCGGCUUGGGC-CGAg-- -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUGaGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11163 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11488 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11423 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11358 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11553 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11618 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11683 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11228 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11098 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11748 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11293 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11813 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAg -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 20067 0.71 0.384897
Target:  5'- aGUCCAGGUCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 9055 0.71 0.384897
Target:  5'- aGUCCAGGUCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 21976 0.71 0.351541
Target:  5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 21886 0.71 0.351541
Target:  5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 21931 0.71 0.351541
Target:  5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.