miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 5' -51.7 NC_005905.1 + 17778 0.67 0.931167
Target:  5'- aUCGaaUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- -AGC--AGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9234 0.67 0.931167
Target:  5'- -------uGCUAACUcuGCCCAAGCCg -3'
miRNA:   3'- agcagcuuCGAUUGAacCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 22156 0.67 0.919645
Target:  5'- -aGUCGAGGCcuGCuUUGGCCaaguuAGCUu -3'
miRNA:   3'- agCAGCUUCGauUG-AACCGGgu---UCGG- -5'
28326 5' -51.7 NC_005905.1 + 8678 0.67 0.907029
Target:  5'- --aUCGAguccAGCccGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agcAGCU----UCGa-UUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49242 0.68 0.878596
Target:  5'- --aUUGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21976 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21931 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21886 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17819 0.7 0.800659
Target:  5'- -aGUUuAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17644 0.7 0.790997
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19518 0.7 0.790997
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 20067 0.7 0.78117
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9055 0.7 0.78117
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 54450 0.7 0.77119
Target:  5'- aCGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCg -3'
miRNA:   3'- aGCAgCUUCGAU---------UGAACCGGg-UUCGG- -5'
28326 5' -51.7 NC_005905.1 + 48921 0.72 0.70872
Target:  5'- aCGUuuacCGAAGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aGCA----GCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49332 0.72 0.676326
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49062 0.72 0.676326
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49197 0.72 0.676326
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49287 0.72 0.676326
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 18011 0.73 0.643558
Target:  5'- cUCGUCaAAGCUAACUUgacagaaaccGGCCUgaacucgguuuAAGCCg -3'
miRNA:   3'- -AGCAGcUUCGAUUGAA----------CCGGG-----------UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.