Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28371 | 5' | -56.9 | NC_005946.1 | + | 76724 | 0.66 | 0.843933 |
Target: 5'- --aGgGGCC-CCGCGGGCGcaggcGGAGuCCa -3' miRNA: 3'- gagUgCCGGuGGUGCCUGCa----CCUU-GG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 21603 | 0.66 | 0.835735 |
Target: 5'- cCUguCGGCCGCCAUcuccaacacCGUGaGAGCCg -3' miRNA: 3'- -GAguGCCGGUGGUGccu------GCAC-CUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 78990 | 0.66 | 0.827349 |
Target: 5'- --gGCGGCguaCGCCAgGGcCG-GGGGCCa -3' miRNA: 3'- gagUGCCG---GUGGUgCCuGCaCCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 85023 | 0.66 | 0.827349 |
Target: 5'- cCUCAUGGgCAUgAUGGAgGgcaucagGGAGCUa -3' miRNA: 3'- -GAGUGCCgGUGgUGCCUgCa------CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 59996 | 0.66 | 0.810048 |
Target: 5'- uUUugGGCCgGCCACGGggcccGCGU--AACCg -3' miRNA: 3'- gAGugCCGG-UGGUGCC-----UGCAccUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 23553 | 0.66 | 0.801149 |
Target: 5'- uUUACGaCCACCucauCGGGCacGGAACCc -3' miRNA: 3'- gAGUGCcGGUGGu---GCCUGcaCCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 13742 | 0.66 | 0.801149 |
Target: 5'- -cCuCGGCCugggACCA-GGACGccgGGGACCg -3' miRNA: 3'- gaGuGCCGG----UGGUgCCUGCa--CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 56516 | 0.67 | 0.792096 |
Target: 5'- uUCACGGggcccCCugCGaaagucaGGACGUgcGGGACCu -3' miRNA: 3'- gAGUGCC-----GGugGUg------CCUGCA--CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 62131 | 0.67 | 0.782897 |
Target: 5'- gCUCACGGCgcaGCCAgGGA-GaGGGGCUc -3' miRNA: 3'- -GAGUGCCGg--UGGUgCCUgCaCCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 21830 | 0.67 | 0.781969 |
Target: 5'- -aCACuGCCGCCAgGGugGccgucaaUGGcGCCa -3' miRNA: 3'- gaGUGcCGGUGGUgCCugC-------ACCuUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 20873 | 0.67 | 0.773561 |
Target: 5'- --aGCaGGCCGCCGCGGugGcccUGaGGGCa -3' miRNA: 3'- gagUG-CCGGUGGUGCCugC---AC-CUUGg -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 83436 | 0.67 | 0.764098 |
Target: 5'- -gCACGGCCAUCACccuGGCGUGucuCCc -3' miRNA: 3'- gaGUGCCGGUGGUGc--CUGCACcuuGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 61526 | 0.67 | 0.754517 |
Target: 5'- aUCACGGgCAagAUGGAC-UGGAACUc -3' miRNA: 3'- gAGUGCCgGUggUGCCUGcACCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 77249 | 0.67 | 0.754517 |
Target: 5'- --uGCgGGCCAguCUGCGGGC-UGGAGCCc -3' miRNA: 3'- gagUG-CCGGU--GGUGCCUGcACCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 79672 | 0.68 | 0.744827 |
Target: 5'- aUCAUGGCgACCAUGu-CGUGcuGGACCu -3' miRNA: 3'- gAGUGCCGgUGGUGCcuGCAC--CUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 14194 | 0.68 | 0.744827 |
Target: 5'- -gCGUGGCCACCAUGaGCGcGGAgGCCa -3' miRNA: 3'- gaGUGCCGGUGGUGCcUGCaCCU-UGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 34437 | 0.68 | 0.744827 |
Target: 5'- --gACGGCUAUguCGGcguAgGUGGGACCg -3' miRNA: 3'- gagUGCCGGUGguGCC---UgCACCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 75136 | 0.68 | 0.715196 |
Target: 5'- uUCAgGGCCAggcCGGACcugGGAGCCa -3' miRNA: 3'- gAGUgCCGGUgguGCCUGca-CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 104363 | 0.68 | 0.715196 |
Target: 5'- cCUCAgGGCCACCAUcuccuCG-GGAGCUu -3' miRNA: 3'- -GAGUgCCGGUGGUGccu--GCaCCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 86947 | 0.68 | 0.695069 |
Target: 5'- aCUCG-GGa-ACCugGcGugGUGGAGCCa -3' miRNA: 3'- -GAGUgCCggUGGugC-CugCACCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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