miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28557 3' -61.6 NC_005946.1 + 24410 0.66 0.604061
Target:  5'- uUGGCCacgguCUCuGCGGcCuUCUCCCacgcgcUCCCCg -3'
miRNA:   3'- -ACCGG-----GAG-CGUCaGcAGAGGG------AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 48647 0.66 0.598051
Target:  5'- aGGCCCccaUCGCAGaaggGUCcaaggccauggccgCCCUCUCCu -3'
miRNA:   3'- aCCGGG---AGCGUCag--CAGa-------------GGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 22494 0.66 0.594049
Target:  5'- gGGCCCU-GUaAGUCGg--UCCUCCUCu -3'
miRNA:   3'- aCCGGGAgCG-UCAGCagaGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 44540 0.66 0.594049
Target:  5'- cGGCCCUgGCGGUgugaggCGUCUUgaggggagCCUCgUCg -3'
miRNA:   3'- aCCGGGAgCGUCA------GCAGAG--------GGAGgGG- -5'
28557 3' -61.6 NC_005946.1 + 26614 0.66 0.584063
Target:  5'- gGGUCCagGUAGUCcUUUgCCgUCCCCg -3'
miRNA:   3'- aCCGGGagCGUCAGcAGA-GGgAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 62728 0.66 0.574111
Target:  5'- gUGGCCCUCuugacgaCGG-CGUCgUCCUUCUUCa -3'
miRNA:   3'- -ACCGGGAGc------GUCaGCAG-AGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 35928 0.66 0.574111
Target:  5'- gGGCCCUCGCAGcgggaCGUUUggaaguccuggCCgUCCUg -3'
miRNA:   3'- aCCGGGAGCGUCa----GCAGA-----------GGgAGGGg -5'
28557 3' -61.6 NC_005946.1 + 11067 0.66 0.573118
Target:  5'- aGGgUCUCGUAcacgucccacacGUCGUCUguccucaCCCUCuCCCa -3'
miRNA:   3'- aCCgGGAGCGU------------CAGCAGA-------GGGAG-GGG- -5'
28557 3' -61.6 NC_005946.1 + 3745 0.67 0.525064
Target:  5'- gGGCCaCgaccaugaCGCcGUCGUCguccgaCCCUCCCa -3'
miRNA:   3'- aCCGG-Ga-------GCGuCAGCAGa-----GGGAGGGg -5'
28557 3' -61.6 NC_005946.1 + 89721 0.67 0.525064
Target:  5'- cGGCCCUuuccaccuuaaaUGCcG-CGUCUCCCUUuacggCCCu -3'
miRNA:   3'- aCCGGGA------------GCGuCaGCAGAGGGAG-----GGG- -5'
28557 3' -61.6 NC_005946.1 + 73566 0.67 0.515436
Target:  5'- cGGCCCUCcucauggaGCAGcacgCGUCcgCCCccgaggaCCCCg -3'
miRNA:   3'- aCCGGGAG--------CGUCa---GCAGa-GGGa------GGGG- -5'
28557 3' -61.6 NC_005946.1 + 22316 0.67 0.496401
Target:  5'- -cGCuCCUcCGUAGUCGgcacaCUCCCUCUCg -3'
miRNA:   3'- acCG-GGA-GCGUCAGCa----GAGGGAGGGg -5'
28557 3' -61.6 NC_005946.1 + 71771 0.67 0.496401
Target:  5'- cGGUCCUgGUGGggaaggUGUCUCaCUCCCUg -3'
miRNA:   3'- aCCGGGAgCGUCa-----GCAGAGgGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 80349 0.68 0.477689
Target:  5'- gGGCCCUCcgacguggaaGcCAGUCacgggcaUCCCUCCCUc -3'
miRNA:   3'- aCCGGGAG----------C-GUCAGcag----AGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 16610 0.68 0.468465
Target:  5'- uUGGCCCcgucaaCGCAGa---CUCuCCUCCCCu -3'
miRNA:   3'- -ACCGGGa-----GCGUCagcaGAG-GGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 95152 0.68 0.450296
Target:  5'- aGGUCCUCGCGGgCaUCUCCag-CCCg -3'
miRNA:   3'- aCCGGGAGCGUCaGcAGAGGgagGGG- -5'
28557 3' -61.6 NC_005946.1 + 35764 0.68 0.44047
Target:  5'- cUGGCCCUCGUauAGUCcccguagGUCaccacagCCCacuuaUCCCCg -3'
miRNA:   3'- -ACCGGGAGCG--UCAG-------CAGa------GGG-----AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 94551 0.68 0.438696
Target:  5'- aGGCaCCUccagagcuuuggagCGaCGGcggugucaUCGUCUCCUUCCCCu -3'
miRNA:   3'- aCCG-GGA--------------GC-GUC--------AGCAGAGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 75736 0.68 0.436044
Target:  5'- gGGCCCUCGCAauaucggcccugauGUCGUuggaCUCcaggaugucggcggCCUCUCCc -3'
miRNA:   3'- aCCGGGAGCGU--------------CAGCA----GAG--------------GGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 102605 0.68 0.431643
Target:  5'- aUGG-CCUCGUAGUC-UUUCCUccuggacuccaugUCCCCg -3'
miRNA:   3'- -ACCgGGAGCGUCAGcAGAGGG-------------AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.