miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28557 5' -51.5 NC_005946.1 + 12829 0.66 0.971212
Target:  5'- -aAGGugGACAuGUCcacGCUGuGGGCCg -3'
miRNA:   3'- agUCCuaUUGU-CAGuu-CGACuCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 65338 0.66 0.970909
Target:  5'- cCAGcacucUGACcaagcagAGUCGGGCgucGAGGGCCa -3'
miRNA:   3'- aGUCcu---AUUG-------UCAGUUCGa--CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 13319 0.66 0.96471
Target:  5'- cCAGGGU---GGU--GGCcGAGGGCCu -3'
miRNA:   3'- aGUCCUAuugUCAguUCGaCUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 21395 0.66 0.961101
Target:  5'- -aGGGAUGacGCAGUCAGGgUaaaGAGGGa- -3'
miRNA:   3'- agUCCUAU--UGUCAGUUCgA---CUCCCgg -5'
28557 5' -51.5 NC_005946.1 + 67727 0.66 0.957243
Target:  5'- cCAGGGccaccACGGugaccUCGGGCUGAGGGaCg -3'
miRNA:   3'- aGUCCUau---UGUC-----AGUUCGACUCCCgG- -5'
28557 5' -51.5 NC_005946.1 + 28299 0.66 0.957243
Target:  5'- cUCGGGGuUGGCGGaaccGGCaGAGGGCUu -3'
miRNA:   3'- -AGUCCU-AUUGUCagu-UCGaCUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 10335 0.66 0.956843
Target:  5'- uUCAGGAUGACGGaggCGuGCUugaggaaGAGGGaCUc -3'
miRNA:   3'- -AGUCCUAUUGUCa--GUuCGA-------CUCCC-GG- -5'
28557 5' -51.5 NC_005946.1 + 76643 0.67 0.953132
Target:  5'- cCAGGGgccCAGggGAGCaGAGGGaCCa -3'
miRNA:   3'- aGUCCUauuGUCagUUCGaCUCCC-GG- -5'
28557 5' -51.5 NC_005946.1 + 76428 0.67 0.948763
Target:  5'- aCAGGGguccaGACGGUUuGGCcggaaUGAgGGGCCu -3'
miRNA:   3'- aGUCCUa----UUGUCAGuUCG-----ACU-CCCGG- -5'
28557 5' -51.5 NC_005946.1 + 14450 0.67 0.943654
Target:  5'- aCAGGcaagacgugcaccGUGGuCAGUguGGCcgaGAGGGCCa -3'
miRNA:   3'- aGUCC-------------UAUU-GUCAguUCGa--CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 94041 0.67 0.939236
Target:  5'- aUCAGGAccAGCAGggggaggAGGCUGgugauugccAGGGCCc -3'
miRNA:   3'- -AGUCCUa-UUGUCag-----UUCGAC---------UCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 73081 0.67 0.938732
Target:  5'- aCAGGcaacugGACAGUCAagaggcucGGCcccccuucuuaugUGAGGGUCg -3'
miRNA:   3'- aGUCCua----UUGUCAGU--------UCG-------------ACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 13184 0.68 0.916964
Target:  5'- cCAGGGgagaggcggUGGCAGUCAccguccacaGGCUGGuGGCUg -3'
miRNA:   3'- aGUCCU---------AUUGUCAGU---------UCGACUcCCGG- -5'
28557 5' -51.5 NC_005946.1 + 3287 0.69 0.897443
Target:  5'- cUCAGGccaucGGCAGUgAGGCUGGcGGCUc -3'
miRNA:   3'- -AGUCCua---UUGUCAgUUCGACUcCCGG- -5'
28557 5' -51.5 NC_005946.1 + 85256 0.69 0.890411
Target:  5'- cUUGGGGcuuGgAGg-GAGCUGGGGGCCa -3'
miRNA:   3'- -AGUCCUau-UgUCagUUCGACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 49190 0.69 0.883122
Target:  5'- cUCAGGAUGggaGCAGcCAGGggGGGcauaGGCCa -3'
miRNA:   3'- -AGUCCUAU---UGUCaGUUCgaCUC----CCGG- -5'
28557 5' -51.5 NC_005946.1 + 4356 0.69 0.883122
Target:  5'- gCAGGGagGACAuGUCuacGUUgGAGGGCCa -3'
miRNA:   3'- aGUCCUa-UUGU-CAGuu-CGA-CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 43183 0.69 0.875582
Target:  5'- cCAGGAgucccaucccgUAGCucuUgAGGUUGAGGGCCu -3'
miRNA:   3'- aGUCCU-----------AUUGuc-AgUUCGACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 28686 0.7 0.859773
Target:  5'- gCAGGcccAGCAGUagaccagguacCAGGCcagGGGGGCCg -3'
miRNA:   3'- aGUCCua-UUGUCA-----------GUUCGa--CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 8929 0.7 0.843036
Target:  5'- gCAGGGUgGGCuG-CcuGUUGAGGGCCa -3'
miRNA:   3'- aGUCCUA-UUGuCaGuuCGACUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.