Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28557 | 5' | -51.5 | NC_005946.1 | + | 479 | 0.7 | 0.824533 |
Target: 5'- cUAGGAgcuuGCGGUCGuuuggguaguacaGGCUgagcaaGAGGGCCu -3' miRNA: 3'- aGUCCUau--UGUCAGU-------------UCGA------CUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 3287 | 0.69 | 0.897443 |
Target: 5'- cUCAGGccaucGGCAGUgAGGCUGGcGGCUc -3' miRNA: 3'- -AGUCCua---UUGUCAgUUCGACUcCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 4356 | 0.69 | 0.883122 |
Target: 5'- gCAGGGagGACAuGUCuacGUUgGAGGGCCa -3' miRNA: 3'- aGUCCUa-UUGU-CAGuu-CGA-CUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 8591 | 0.71 | 0.78793 |
Target: 5'- aCGGGc--ACAGUCAGGUUGucGGCUa -3' miRNA: 3'- aGUCCuauUGUCAGUUCGACucCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 8929 | 0.7 | 0.843036 |
Target: 5'- gCAGGGUgGGCuG-CcuGUUGAGGGCCa -3' miRNA: 3'- aGUCCUA-UUGuCaGuuCGACUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 10335 | 0.66 | 0.956843 |
Target: 5'- uUCAGGAUGACGGaggCGuGCUugaggaaGAGGGaCUc -3' miRNA: 3'- -AGUCCUAUUGUCa--GUuCGA-------CUCCC-GG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 12829 | 0.66 | 0.971212 |
Target: 5'- -aAGGugGACAuGUCcacGCUGuGGGCCg -3' miRNA: 3'- agUCCuaUUGU-CAGuu-CGACuCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 13184 | 0.68 | 0.916964 |
Target: 5'- cCAGGGgagaggcggUGGCAGUCAccguccacaGGCUGGuGGCUg -3' miRNA: 3'- aGUCCU---------AUUGUCAGU---------UCGACUcCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 13319 | 0.66 | 0.96471 |
Target: 5'- cCAGGGU---GGU--GGCcGAGGGCCu -3' miRNA: 3'- aGUCCUAuugUCAguUCGaCUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 14450 | 0.67 | 0.943654 |
Target: 5'- aCAGGcaagacgugcaccGUGGuCAGUguGGCcgaGAGGGCCa -3' miRNA: 3'- aGUCC-------------UAUU-GUCAguUCGa--CUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 21395 | 0.66 | 0.961101 |
Target: 5'- -aGGGAUGacGCAGUCAGGgUaaaGAGGGa- -3' miRNA: 3'- agUCCUAU--UGUCAGUUCgA---CUCCCgg -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 28299 | 0.66 | 0.957243 |
Target: 5'- cUCGGGGuUGGCGGaaccGGCaGAGGGCUu -3' miRNA: 3'- -AGUCCU-AUUGUCagu-UCGaCUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 28686 | 0.7 | 0.859773 |
Target: 5'- gCAGGcccAGCAGUagaccagguacCAGGCcagGGGGGCCg -3' miRNA: 3'- aGUCCua-UUGUCA-----------GUUCGa--CUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 43183 | 0.69 | 0.875582 |
Target: 5'- cCAGGAgucccaucccgUAGCucuUgAGGUUGAGGGCCu -3' miRNA: 3'- aGUCCU-----------AUUGuc-AgUUCGACUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 44801 | 0.71 | 0.78793 |
Target: 5'- gCAGGAgggcGCuGUUGGcGUUGGGGGCCa -3' miRNA: 3'- aGUCCUau--UGuCAGUU-CGACUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 49190 | 0.69 | 0.883122 |
Target: 5'- cUCAGGAUGggaGCAGcCAGGggGGGcauaGGCCa -3' miRNA: 3'- -AGUCCUAU---UGUCaGUUCgaCUC----CCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 55652 | 0.7 | 0.843036 |
Target: 5'- aCGGGA---CGGUgGGGUUGAGGaGCCc -3' miRNA: 3'- aGUCCUauuGUCAgUUCGACUCC-CGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 60251 | 0.72 | 0.747898 |
Target: 5'- cCAGGggGGCAGUCu-GCUGcuGGGUCc -3' miRNA: 3'- aGUCCuaUUGUCAGuuCGACu-CCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 61216 | 0.83 | 0.21921 |
Target: 5'- aCAGGuacuuugAGCAGUgccugggCAGGCUGAGGGCCa -3' miRNA: 3'- aGUCCua-----UUGUCA-------GUUCGACUCCCGG- -5' |
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28557 | 5' | -51.5 | NC_005946.1 | + | 65338 | 0.66 | 0.970909 |
Target: 5'- cCAGcacucUGACcaagcagAGUCGGGCgucGAGGGCCa -3' miRNA: 3'- aGUCcu---AUUG-------UCAGUUCGa--CUCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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