miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28557 5' -51.5 NC_005946.1 + 61216 0.83 0.21921
Target:  5'- aCAGGuacuuugAGCAGUgccugggCAGGCUGAGGGCCa -3'
miRNA:   3'- aGUCCua-----UUGUCA-------GUUCGACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 98542 0.75 0.576301
Target:  5'- --uGGGUGGgGGUCcugcAGGCUGAGGGCa -3'
miRNA:   3'- aguCCUAUUgUCAG----UUCGACUCCCGg -5'
28557 5' -51.5 NC_005946.1 + 95378 0.73 0.684632
Target:  5'- gUCAGGggGACcGUCAGGCccaGGGGCUu -3'
miRNA:   3'- -AGUCCuaUUGuCAGUUCGac-UCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 102092 0.72 0.734459
Target:  5'- gUCAGGAccuGCAccgucucgggguccGUCAGGCUGGGGuCCa -3'
miRNA:   3'- -AGUCCUau-UGU--------------CAGUUCGACUCCcGG- -5'
28557 5' -51.5 NC_005946.1 + 60251 0.72 0.747898
Target:  5'- cCAGGggGGCAGUCu-GCUGcuGGGUCc -3'
miRNA:   3'- aGUCCuaUUGUCAGuuCGACu-CCCGG- -5'
28557 5' -51.5 NC_005946.1 + 8591 0.71 0.78793
Target:  5'- aCGGGc--ACAGUCAGGUUGucGGCUa -3'
miRNA:   3'- aGUCCuauUGUCAGUUCGACucCCGG- -5'
28557 5' -51.5 NC_005946.1 + 44801 0.71 0.78793
Target:  5'- gCAGGAgggcGCuGUUGGcGUUGGGGGCCa -3'
miRNA:   3'- aGUCCUau--UGuCAGUU-CGACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 72814 0.71 0.78793
Target:  5'- cCAGGGagguugugcUGGCcaccGUCAGGCUGggaaAGGGCCu -3'
miRNA:   3'- aGUCCU---------AUUGu---CAGUUCGAC----UCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 479 0.7 0.824533
Target:  5'- cUAGGAgcuuGCGGUCGuuuggguaguacaGGCUgagcaaGAGGGCCu -3'
miRNA:   3'- aGUCCUau--UGUCAGU-------------UCGA------CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 71912 0.7 0.834339
Target:  5'- aCGGGGUGAUAgacccGUCGuGCgcGGGGGCCc -3'
miRNA:   3'- aGUCCUAUUGU-----CAGUuCGa-CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 8929 0.7 0.843036
Target:  5'- gCAGGGUgGGCuG-CcuGUUGAGGGCCa -3'
miRNA:   3'- aGUCCUA-UUGuCaGuuCGACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 55652 0.7 0.843036
Target:  5'- aCGGGA---CGGUgGGGUUGAGGaGCCc -3'
miRNA:   3'- aGUCCUauuGUCAgUUCGACUCC-CGG- -5'
28557 5' -51.5 NC_005946.1 + 28686 0.7 0.859773
Target:  5'- gCAGGcccAGCAGUagaccagguacCAGGCcagGGGGGCCg -3'
miRNA:   3'- aGUCCua-UUGUCA-----------GUUCGa--CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 43183 0.69 0.875582
Target:  5'- cCAGGAgucccaucccgUAGCucuUgAGGUUGAGGGCCu -3'
miRNA:   3'- aGUCCU-----------AUUGuc-AgUUCGACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 49190 0.69 0.883122
Target:  5'- cUCAGGAUGggaGCAGcCAGGggGGGcauaGGCCa -3'
miRNA:   3'- -AGUCCUAU---UGUCaGUUCgaCUC----CCGG- -5'
28557 5' -51.5 NC_005946.1 + 4356 0.69 0.883122
Target:  5'- gCAGGGagGACAuGUCuacGUUgGAGGGCCa -3'
miRNA:   3'- aGUCCUa-UUGU-CAGuu-CGA-CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 85256 0.69 0.890411
Target:  5'- cUUGGGGcuuGgAGg-GAGCUGGGGGCCa -3'
miRNA:   3'- -AGUCCUau-UgUCagUUCGACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 3287 0.69 0.897443
Target:  5'- cUCAGGccaucGGCAGUgAGGCUGGcGGCUc -3'
miRNA:   3'- -AGUCCua---UUGUCAgUUCGACUcCCGG- -5'
28557 5' -51.5 NC_005946.1 + 13184 0.68 0.916964
Target:  5'- cCAGGGgagaggcggUGGCAGUCAccguccacaGGCUGGuGGCUg -3'
miRNA:   3'- aGUCCU---------AUUGUCAGU---------UCGACUcCCGG- -5'
28557 5' -51.5 NC_005946.1 + 73081 0.67 0.938732
Target:  5'- aCAGGcaacugGACAGUCAagaggcucGGCcccccuucuuaugUGAGGGUCg -3'
miRNA:   3'- aGUCCua----UUGUCAGU--------UCG-------------ACUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.