miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28724 3' -53.6 NC_006146.1 + 40438 0.66 0.969392
Target:  5'- gGCAGCgGCCccGUaGGCGggugCGGCAAUGg -3'
miRNA:   3'- -UGUCGaCGGucUA-CCGUa---GCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 67066 0.66 0.966263
Target:  5'- cACcuCUGCCAGAcgGGCcgagaagggGUCGGCGGCc -3'
miRNA:   3'- -UGucGACGGUCUa-CCG---------UAGCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 49373 0.66 0.966263
Target:  5'- cGCAcgauCUGCUGGAUGGUGUCGcGCAGgCGg -3'
miRNA:   3'- -UGUc---GACGGUCUACCGUAGC-UGUU-GC- -5'
28724 3' -53.6 NC_006146.1 + 66495 0.66 0.966263
Target:  5'- uGCGGCaGCCGGAUG-CAcCGGcCGGCGu -3'
miRNA:   3'- -UGUCGaCGGUCUACcGUaGCU-GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 8129 0.66 0.962915
Target:  5'- -aGGCcGCUAGGUGGCGgcauaGACAAUu -3'
miRNA:   3'- ugUCGaCGGUCUACCGUag---CUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 47670 0.66 0.962915
Target:  5'- cGCGGCgGCCAG--GGUcUCGugGAUGg -3'
miRNA:   3'- -UGUCGaCGGUCuaCCGuAGCugUUGC- -5'
28724 3' -53.6 NC_006146.1 + 33228 0.66 0.959342
Target:  5'- -gGGCaGCCGGGUGGC--CGcCGGCGg -3'
miRNA:   3'- ugUCGaCGGUCUACCGuaGCuGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 46589 0.66 0.959342
Target:  5'- aGCAGCgucaugGCCAcGAUGGgGUUGuCGGCc -3'
miRNA:   3'- -UGUCGa-----CGGU-CUACCgUAGCuGUUGc -5'
28724 3' -53.6 NC_006146.1 + 49176 0.66 0.955539
Target:  5'- aGCAGUUcCCGGAUGGUA-CGGCGGg- -3'
miRNA:   3'- -UGUCGAcGGUCUACCGUaGCUGUUgc -5'
28724 3' -53.6 NC_006146.1 + 49486 0.66 0.955146
Target:  5'- cGCGGUgucgGCCAGGggcggcgUGGCAUCugGAuCGGCGg -3'
miRNA:   3'- -UGUCGa---CGGUCU-------ACCGUAG--CU-GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 55765 0.67 0.953145
Target:  5'- gGCGGCggGCCAGG-GGCAgCGAggccaccacgcuggcCAGCGa -3'
miRNA:   3'- -UGUCGa-CGGUCUaCCGUaGCU---------------GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 46456 0.67 0.947226
Target:  5'- gGCGGCguagGCCGGAUGcGUGcCGACcAGCa -3'
miRNA:   3'- -UGUCGa---CGGUCUAC-CGUaGCUG-UUGc -5'
28724 3' -53.6 NC_006146.1 + 60478 0.67 0.947226
Target:  5'- aGCGGUgagagGCCGGggGGCcagcuccccCGACGGCGa -3'
miRNA:   3'- -UGUCGa----CGGUCuaCCGua-------GCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 112166 0.67 0.947226
Target:  5'- gGCGGCaUGUguGGUGGCAUUGGUggUGc -3'
miRNA:   3'- -UGUCG-ACGguCUACCGUAGCUGuuGC- -5'
28724 3' -53.6 NC_006146.1 + 112055 0.67 0.947226
Target:  5'- -gGGCUGCCGGccuugacGGCGcagUUGACGAUGg -3'
miRNA:   3'- ugUCGACGGUCua-----CCGU---AGCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 149824 0.67 0.93294
Target:  5'- -aGGCU-CCGGGUGGUGUgGGCGGCc -3'
miRNA:   3'- ugUCGAcGGUCUACCGUAgCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 123700 0.67 0.93294
Target:  5'- -aGGCgGCCAGGggccUGGCGcucggggCGGCGGCGg -3'
miRNA:   3'- ugUCGaCGGUCU----ACCGUa------GCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 134444 0.68 0.927685
Target:  5'- -aGGCUGUagccuuUAGAUGGCGUaacaGGCAACu -3'
miRNA:   3'- ugUCGACG------GUCUACCGUAg---CUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 165804 0.68 0.927685
Target:  5'- cACGGCcgGCUAGGggggcgucccUGGCcgCGugGACGc -3'
miRNA:   3'- -UGUCGa-CGGUCU----------ACCGuaGCugUUGC- -5'
28724 3' -53.6 NC_006146.1 + 84878 0.68 0.927685
Target:  5'- aGCGGCU-CCAG-UGGCAgCGACAcugGCa -3'
miRNA:   3'- -UGUCGAcGGUCuACCGUaGCUGU---UGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.