miRNA display CGI


Results 21 - 40 of 416 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 21097 0.73 0.165401
Target:  5'- cGCCuUGCCCUgCGCCcggGGCCACcuccACCGUCa -3'
miRNA:   3'- aCGG-ACGGGG-GCGG---CCGGUG----UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 130499 0.73 0.157782
Target:  5'- gGCUacuuUGCCCCCGCgggaGGCUACuACgCGCCg -3'
miRNA:   3'- aCGG----ACGGGGGCGg---CCGGUG-UG-GCGG- -5'
28727 5' -66.7 NC_006146.1 + 9468 0.76 0.110093
Target:  5'- cGCCUuggGUUCCCGCgGgGCCACAcCCGCCu -3'
miRNA:   3'- aCGGA---CGGGGGCGgC-CGGUGU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 160162 0.78 0.076169
Target:  5'- aGCCgcaugGCCCCgGCUGGCuCugGCUGCCc -3'
miRNA:   3'- aCGGa----CGGGGgCGGCCG-GugUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 30213 0.72 0.194722
Target:  5'- gGCCgcUGCgCCCGCCGGgCugGCCGg- -3'
miRNA:   3'- aCGG--ACGgGGGCGGCCgGugUGGCgg -5'
28727 5' -66.7 NC_006146.1 + 42125 0.73 0.177449
Target:  5'- cGCUUcGgCCCUGCUGGCCACACUccagaagaagGCCu -3'
miRNA:   3'- aCGGA-CgGGGGCGGCCGGUGUGG----------CGG- -5'
28727 5' -66.7 NC_006146.1 + 46948 0.74 0.133237
Target:  5'- aGCCacagggUGCCCgcguauuUCGCCGGCCcggcCGCCGCCa -3'
miRNA:   3'- aCGG------ACGGG-------GGCGGCCGGu---GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 44712 0.78 0.070705
Target:  5'- gGCCgugGCCCCCGCUGGCCgGCcugaugcggugGCCGCg -3'
miRNA:   3'- aCGGa--CGGGGGCGGCCGG-UG-----------UGGCGg -5'
28727 5' -66.7 NC_006146.1 + 52914 0.73 0.177035
Target:  5'- cUGCgUgGCCCCCcgggggcGCUGGCCucgucCGCCGCCu -3'
miRNA:   3'- -ACGgA-CGGGGG-------CGGCCGGu----GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 131053 0.79 0.060886
Target:  5'- gGCacacaGCCCCCGCCGGCCcACugugcggccgagGCCGCCg -3'
miRNA:   3'- aCGga---CGGGGGCGGCCGG-UG------------UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 53014 0.74 0.133557
Target:  5'- gGCCcuggGCCUCacgcgGCUGGCCGCGgCCGCCg -3'
miRNA:   3'- aCGGa---CGGGGg----CGGCCGGUGU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 24175 0.73 0.165401
Target:  5'- cGCCuUGCCCUgCGCCcggGGCCACcuccACCGUCa -3'
miRNA:   3'- aCGG-ACGGGG-GCGG---CCGGUG----UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 127253 0.75 0.126985
Target:  5'- aGCCggGCCCCUcuccccaGgCGGCCACGCCccGCCg -3'
miRNA:   3'- aCGGa-CGGGGG-------CgGCCGGUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 55714 0.76 0.110093
Target:  5'- gGCuCUGCCCgCCGCUGGCCu--CCGCg -3'
miRNA:   3'- aCG-GACGGG-GGCGGCCGGuguGGCGg -5'
28727 5' -66.7 NC_006146.1 + 78802 0.76 0.10486
Target:  5'- gGCCcGCCCCCcagcagcaGCCccaGGCCGgGCCGCCc -3'
miRNA:   3'- aCGGaCGGGGG--------CGG---CCGGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 128141 0.78 0.080034
Target:  5'- cGCCUGCaCCUGUCGGCCcUGCUGCCg -3'
miRNA:   3'- aCGGACGgGGGCGGCCGGuGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 78890 0.72 0.208626
Target:  5'- gGCCcGCCCCCcagcagcaGCCccaGGCCGgGcCCGCCa -3'
miRNA:   3'- aCGGaCGGGGG--------CGG---CCGGUgU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 47193 0.72 0.194722
Target:  5'- cGCCgccGCCCCgagCGCCaGGCccCugGCCGCCu -3'
miRNA:   3'- aCGGa--CGGGG---GCGG-CCG--GugUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 58039 0.72 0.185908
Target:  5'- gGCCUacgagcgcauaGUCUCCGCCGGCUAC-CUGUCg -3'
miRNA:   3'- aCGGA-----------CGGGGGCGGCCGGUGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 113802 0.73 0.177449
Target:  5'- -cCCUcUCCCCGCUGGCCaggacGCGCCGCUc -3'
miRNA:   3'- acGGAcGGGGGCGGCCGG-----UGUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.