miRNA display CGI


Results 21 - 40 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 160600 0.77 0.090534
Target:  5'- gUGCUUGCCCCCgagGUCGGCCGCcugGCaUGCCa -3'
miRNA:   3'- -ACGGACGGGGG---CGGCCGGUG---UG-GCGG- -5'
28727 5' -66.7 NC_006146.1 + 78802 0.76 0.10486
Target:  5'- gGCCcGCCCCCcagcagcaGCCccaGGCCGgGCCGCCc -3'
miRNA:   3'- aCGGaCGGGGG--------CGG---CCGGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 56595 0.76 0.107447
Target:  5'- cGCCgaGCCCgCCGCCGGUCuccuCGCCGgCg -3'
miRNA:   3'- aCGGa-CGGG-GGCGGCCGGu---GUGGCgG- -5'
28727 5' -66.7 NC_006146.1 + 161000 0.76 0.107447
Target:  5'- cGUC-GCCuCCUGCCuGGCCGuCACCGCCu -3'
miRNA:   3'- aCGGaCGG-GGGCGG-CCGGU-GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 43809 0.76 0.109559
Target:  5'- gUGCCUGuCCCaCCGCUccgcccuGGCCcuuucggcuucccGCGCCGCCa -3'
miRNA:   3'- -ACGGAC-GGG-GGCGG-------CCGG-------------UGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 9468 0.76 0.110093
Target:  5'- cGCCUuggGUUCCCGCgGgGCCACAcCCGCCu -3'
miRNA:   3'- aCGGA---CGGGGGCGgC-CGGUGU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 55714 0.76 0.110093
Target:  5'- gGCuCUGCCCgCCGCUGGCCu--CCGCg -3'
miRNA:   3'- aCG-GACGGG-GGCGGCCGGuguGGCGg -5'
28727 5' -66.7 NC_006146.1 + 54946 0.75 0.121298
Target:  5'- cGUCUGCCCgcggggcgaCCGCCGccGCCGCuACCGCUg -3'
miRNA:   3'- aCGGACGGG---------GGCGGC--CGGUG-UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 8867 0.75 0.124261
Target:  5'- aGCCUGCCCCCGCCc-CCAgGCUcCCa -3'
miRNA:   3'- aCGGACGGGGGCGGccGGUgUGGcGG- -5'
28727 5' -66.7 NC_006146.1 + 127253 0.75 0.126985
Target:  5'- aGCCggGCCCCUcuccccaGgCGGCCACGCCccGCCg -3'
miRNA:   3'- aCGGa-CGGGGG-------CgGCCGGUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 1138 0.75 0.130389
Target:  5'- cGCCggUGCCCCCGCgaGGguccCCGgGCCGCCc -3'
miRNA:   3'- aCGG--ACGGGGGCGg-CC----GGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 95408 0.75 0.130389
Target:  5'- cGCUggUGCUCuuGCCGGCC-C-CCGCCg -3'
miRNA:   3'- aCGG--ACGGGggCGGCCGGuGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 109484 0.75 0.130389
Target:  5'- gGCCgUGCCCgCGuuGGCCACcgcaGCCaGCCu -3'
miRNA:   3'- aCGG-ACGGGgGCggCCGGUG----UGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 130456 0.75 0.130389
Target:  5'- gGCCauUGCCgcaCCCGCCuacggGGCCGCuGCCGCCc -3'
miRNA:   3'- aCGG--ACGG---GGGCGG-----CCGGUG-UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 3002 0.75 0.130389
Target:  5'- cGCCggUGCCCCCGCgaGGguccCCGgGCCGCCc -3'
miRNA:   3'- aCGG--ACGGGGGCGg-CC----GGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 2070 0.75 0.130389
Target:  5'- cGCCggUGCCCCCGCgaGGguccCCGgGCCGCCc -3'
miRNA:   3'- aCGG--ACGGGGGCGg-CC----GGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 46948 0.74 0.133237
Target:  5'- aGCCacagggUGCCCgcguauuUCGCCGGCCcggcCGCCGCCa -3'
miRNA:   3'- aCGG------ACGGG-------GGCGGCCGGu---GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 53014 0.74 0.133557
Target:  5'- gGCCcuggGCCUCacgcgGCUGGCCGCGgCCGCCg -3'
miRNA:   3'- aCGGa---CGGGGg----CGGCCGGUGU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 127569 0.74 0.140105
Target:  5'- cGCCUGCUggCCCugggcgGCCgaGGCCGCGCCgGCCg -3'
miRNA:   3'- aCGGACGG--GGG------CGG--CCGGUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 1669 0.74 0.146947
Target:  5'- aGCCcccucaGCCCCCgGCCGGCgC-CGCCGCg -3'
miRNA:   3'- aCGGa-----CGGGGG-CGGCCG-GuGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.