miRNA display CGI


Results 21 - 40 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 2477 0.66 0.46384
Target:  5'- cUGCCcccucuCCCCCGCCaGgCACACCcuCCu -3'
miRNA:   3'- -ACGGac----GGGGGCGGcCgGUGUGGc-GG- -5'
28727 5' -66.7 NC_006146.1 + 2565 0.79 0.067273
Target:  5'- cGCUgGCCCCCGCCaGGCCccgGCcCCGCCc -3'
miRNA:   3'- aCGGaCGGGGGCGG-CCGG---UGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 2601 0.74 0.146947
Target:  5'- aGCCcccucaGCCCCCgGCCGGCgC-CGCCGCg -3'
miRNA:   3'- aCGGa-----CGGGGG-CGGCCG-GuGUGGCGg -5'
28727 5' -66.7 NC_006146.1 + 2663 0.78 0.080034
Target:  5'- cGCCgGCCCCCccugcaggcGCCGGCCcCucCCGCCg -3'
miRNA:   3'- aCGGaCGGGGG---------CGGCCGGuGu-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 2776 0.68 0.3671
Target:  5'- cGCC-GCCCCCcgggaccCCgGGCgCGCGCCgGCCu -3'
miRNA:   3'- aCGGaCGGGGGc------GG-CCG-GUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 3002 0.75 0.130389
Target:  5'- cGCCggUGCCCCCGCgaGGguccCCGgGCCGCCc -3'
miRNA:   3'- aCGG--ACGGGGGCGg-CC----GGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 3141 0.67 0.389961
Target:  5'- aGCCaUGCgCgCCCacCCGGCCcCugCGCCc -3'
miRNA:   3'- aCGG-ACG-G-GGGc-GGCCGGuGugGCGG- -5'
28727 5' -66.7 NC_006146.1 + 3252 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 3301 0.68 0.359687
Target:  5'- cGCCcccgagGCCCCCaggggaggcCCGGCCuccacACACgGCCu -3'
miRNA:   3'- aCGGa-----CGGGGGc--------GGCCGG-----UGUGgCGG- -5'
28727 5' -66.7 NC_006146.1 + 3409 0.66 0.46384
Target:  5'- cUGCCcccucuCCCCCGCCaGgCACACCcuCCu -3'
miRNA:   3'- -ACGGac----GGGGGCGGcCgGUGUGGc-GG- -5'
28727 5' -66.7 NC_006146.1 + 3497 0.79 0.067273
Target:  5'- cGCUgGCCCCCGCCaGGCCccgGCcCCGCCc -3'
miRNA:   3'- aCGGaCGGGGGCGG-CCGG---UGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 3533 0.74 0.146947
Target:  5'- aGCCcccucaGCCCCCgGCCGGCgC-CGCCGCg -3'
miRNA:   3'- aCGGa-----CGGGGG-CGGCCG-GuGUGGCGg -5'
28727 5' -66.7 NC_006146.1 + 3595 0.78 0.080034
Target:  5'- cGCCgGCCCCCccugcaggcGCCGGCCcCucCCGCCg -3'
miRNA:   3'- aCGGaCGGGGG---------CGGCCGGuGu-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 3708 0.68 0.3671
Target:  5'- cGCC-GCCCCCcgggaccCCgGGCgCGCGCCgGCCu -3'
miRNA:   3'- aCGGaCGGGGGc------GG-CCG-GUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 4221 0.8 0.049825
Target:  5'- cGUCUcCCCCCuGCCaGGCCACACCGCUc -3'
miRNA:   3'- aCGGAcGGGGG-CGG-CCGGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 4895 0.66 0.46384
Target:  5'- gGCCUGCg-CCGCCuGGUgACAgaGCCg -3'
miRNA:   3'- aCGGACGggGGCGG-CCGgUGUggCGG- -5'
28727 5' -66.7 NC_006146.1 + 5094 0.73 0.169333
Target:  5'- gGCCagggacGCCCCCcuaGCCGGCCGugcCACCGUg -3'
miRNA:   3'- aCGGa-----CGGGGG---CGGCCGGU---GUGGCGg -5'
28727 5' -66.7 NC_006146.1 + 7282 0.68 0.359687
Target:  5'- -uCCUGCCCCaCGCCuuccggggagaGGCCucaacuggGCAUUGCCc -3'
miRNA:   3'- acGGACGGGG-GCGG-----------CCGG--------UGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 8867 0.75 0.124261
Target:  5'- aGCCUGCCCCCGCCc-CCAgGCUcCCa -3'
miRNA:   3'- aCGGACGGGGGCGGccGGUgUGGcGG- -5'
28727 5' -66.7 NC_006146.1 + 9141 0.69 0.324212
Target:  5'- cGCCcaggcGCCCCC-UCGGaCCucaGCCGCCa -3'
miRNA:   3'- aCGGa----CGGGGGcGGCC-GGug-UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.