miRNA display CGI


Results 21 - 40 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 163199 0.68 0.351655
Target:  5'- gGCuuCUGCCCCUcagaggaGCCGGgCAgGCCGUa -3'
miRNA:   3'- aCG--GACGGGGG-------CGGCCgGUgUGGCGg -5'
28727 5' -66.7 NC_006146.1 + 161000 0.76 0.107447
Target:  5'- cGUC-GCCuCCUGCCuGGCCGuCACCGCCu -3'
miRNA:   3'- aCGGaCGG-GGGCGG-CCGGU-GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 160600 0.77 0.090534
Target:  5'- gUGCUUGCCCCCgagGUCGGCCGCcugGCaUGCCa -3'
miRNA:   3'- -ACGGACGGGGG---CGGCCGGUG---UG-GCGG- -5'
28727 5' -66.7 NC_006146.1 + 160162 0.78 0.076169
Target:  5'- aGCCgcaugGCCCCgGCUGGCuCugGCUGCCc -3'
miRNA:   3'- aCGGa----CGGGGgCGGCCG-GugUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 159902 0.68 0.359687
Target:  5'- cGUCaaagaaGaCCCCCGucaCCGGCaGCGCCGCCu -3'
miRNA:   3'- aCGGa-----C-GGGGGC---GGCCGgUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 159529 0.66 0.438377
Target:  5'- aGCUUGCCCaCCuGCCuGaCgCGCAgCGCCu -3'
miRNA:   3'- aCGGACGGG-GG-CGGcC-G-GUGUgGCGG- -5'
28727 5' -66.7 NC_006146.1 + 159377 0.66 0.481238
Target:  5'- aGCUgaccGCCagCUCGCaGGCCGCGCUGUCc -3'
miRNA:   3'- aCGGa---CGG--GGGCGgCCGGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 158835 0.68 0.344463
Target:  5'- gGCCcgGCCCUCGCaaagcgagCacauggggcugguGGCCGCAcCCGCCa -3'
miRNA:   3'- aCGGa-CGGGGGCG--------G-------------CCGGUGU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 158116 0.67 0.412926
Target:  5'- cGUCcGCCCCUGCagGGCCGCGuccagguCCGgCa -3'
miRNA:   3'- aCGGaCGGGGGCGg-CCGGUGU-------GGCgG- -5'
28727 5' -66.7 NC_006146.1 + 158054 0.68 0.352379
Target:  5'- aGCCUcGCCCCaggCGCCuccucgGGUCcgGCCGCCg -3'
miRNA:   3'- aCGGA-CGGGG---GCGG------CCGGugUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 157831 0.67 0.389184
Target:  5'- cGCgCUGgCCCCGgaggggaCgGGCaccgaGCGCCGCCu -3'
miRNA:   3'- aCG-GACgGGGGC-------GgCCGg----UGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 157781 0.66 0.454412
Target:  5'- aGCCUGCugCCCCaggagagGCCGGaCC---CCGCCu -3'
miRNA:   3'- aCGGACG--GGGG-------CGGCC-GGuguGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 157562 0.67 0.389961
Target:  5'- gGUg-GCCUCCGCguaGGCCGCggccgacuccACCGCCc -3'
miRNA:   3'- aCGgaCGGGGGCGg--CCGGUG----------UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 157174 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 157061 0.69 0.304209
Target:  5'- cGCCgggGUCCCUccgGCCGGCCugAUgGaCCc -3'
miRNA:   3'- aCGGa--CGGGGG---CGGCCGGugUGgC-GG- -5'
28727 5' -66.7 NC_006146.1 + 156966 0.67 0.389961
Target:  5'- uUGUCcuggGCUCCC-CCGGgcCCAC-CCGCCa -3'
miRNA:   3'- -ACGGa---CGGGGGcGGCC--GGUGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 156870 0.82 0.038723
Target:  5'- cGCCUGCCCCCGCCuGCUcccuGCccuCCGCCu -3'
miRNA:   3'- aCGGACGGGGGCGGcCGG----UGu--GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 156493 0.7 0.285167
Target:  5'- cUGCCUGCUCCUguGCCcGCCucgGgGCUGCCu -3'
miRNA:   3'- -ACGGACGGGGG--CGGcCGG---UgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 156141 0.66 0.445933
Target:  5'- gUGCCcGagCCCCGCCuGCCugACCucguucucaaagaGCCc -3'
miRNA:   3'- -ACGGaCg-GGGGCGGcCGGugUGG-------------CGG- -5'
28727 5' -66.7 NC_006146.1 + 156091 0.68 0.353106
Target:  5'- gUGCCcuccuccGgCCCgGCCGGCCucuccuuccccucaGCCGCCa -3'
miRNA:   3'- -ACGGa------CgGGGgCGGCCGGug------------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.