miRNA display CGI


Results 1 - 20 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 170325 0.67 0.382237
Target:  5'- gGCCgcGCCCCCgGCCccucuccugggaGGCCACGuguggaggcCCGCg -3'
miRNA:   3'- aCGGa-CGGGGG-CGG------------CCGGUGU---------GGCGg -5'
28727 5' -66.7 NC_006146.1 + 170144 0.66 0.472499
Target:  5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3'
miRNA:   3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 170029 0.69 0.297755
Target:  5'- cGUCUGCUCCCG-CGGCCAguCC-CUg -3'
miRNA:   3'- aCGGACGGGGGCgGCCGGUguGGcGG- -5'
28727 5' -66.7 NC_006146.1 + 169394 0.67 0.382237
Target:  5'- gGCCgcGCCCCCgGCCccucuccugggaGGCCACGuguggaggcCCGCg -3'
miRNA:   3'- aCGGa-CGGGGG-CGG------------CCGGUGU---------GGCGg -5'
28727 5' -66.7 NC_006146.1 + 169213 0.66 0.472499
Target:  5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3'
miRNA:   3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 169097 0.69 0.297755
Target:  5'- cGUCUGCUCCCG-CGGCCAguCC-CUg -3'
miRNA:   3'- aCGGACGGGGGCgGCCGGUguGGcGG- -5'
28727 5' -66.7 NC_006146.1 + 169062 0.66 0.455265
Target:  5'- gUGCCUGUggcaCCCgGCUGuGCC---CCGCCa -3'
miRNA:   3'- -ACGGACG----GGGgCGGC-CGGuguGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 168462 0.67 0.382237
Target:  5'- gGCCgcGCCCCCgGCCccucuccugggaGGCCACGuguggaggcCCGCg -3'
miRNA:   3'- aCGGa-CGGGGG-CGG------------CCGGUGU---------GGCGg -5'
28727 5' -66.7 NC_006146.1 + 168425 1.1 0.000302
Target:  5'- cUGCCUGCCCCCGCCGGCCACACCGCCa -3'
miRNA:   3'- -ACGGACGGGGGCGGCCGGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 168281 0.66 0.472499
Target:  5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3'
miRNA:   3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 168165 0.69 0.297755
Target:  5'- cGUCUGCUCCCG-CGGCCAguCC-CUg -3'
miRNA:   3'- aCGGACGGGGGCgGCCGGUguGGcGG- -5'
28727 5' -66.7 NC_006146.1 + 167530 0.67 0.382237
Target:  5'- gGCCgcGCCCCCgGCCccucuccugggaGGCCACGuguggaggcCCGCg -3'
miRNA:   3'- aCGGa-CGGGGG-CGG------------CCGGUGU---------GGCGg -5'
28727 5' -66.7 NC_006146.1 + 167349 0.66 0.472499
Target:  5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3'
miRNA:   3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 167233 0.69 0.297755
Target:  5'- cGUCUGCUCCCG-CGGCCAguCC-CUg -3'
miRNA:   3'- aCGGACGGGGGCgGCCGGUguGGcGG- -5'
28727 5' -66.7 NC_006146.1 + 166715 0.65 0.487402
Target:  5'- aGCCgGUUCCCGCCGaGCCcgucucggggcaggAgGCCgaGCCg -3'
miRNA:   3'- aCGGaCGGGGGCGGC-CGG--------------UgUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 166377 0.72 0.205778
Target:  5'- cUGCCgGCaccgagauggucaccCCCCGCUGGCC-CGCCaguGCCa -3'
miRNA:   3'- -ACGGaCG---------------GGGGCGGCCGGuGUGG---CGG- -5'
28727 5' -66.7 NC_006146.1 + 166225 0.72 0.185908
Target:  5'- cUGaUCUGCCCCCGCCucGCC-CACCcgGCCc -3'
miRNA:   3'- -AC-GGACGGGGGCGGc-CGGuGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 166038 0.69 0.323529
Target:  5'- gUGCCUgugGCCCCCGCCccuGCCccuauuccccuccAUGCUGCUg -3'
miRNA:   3'- -ACGGA---CGGGGGCGGc--CGG-------------UGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 165267 0.67 0.421853
Target:  5'- -cCCUGuCCCCCGCCauGGCCAUGuCC-CUg -3'
miRNA:   3'- acGGAC-GGGGGCGG--CCGGUGU-GGcGG- -5'
28727 5' -66.7 NC_006146.1 + 164344 0.68 0.370094
Target:  5'- gGCCcguUGCCCCCGUuaccaCGGUCAuUuaggugaacacuguuGCCGCCg -3'
miRNA:   3'- aCGG---ACGGGGGCG-----GCCGGU-G---------------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.