miRNA display CGI


Results 1 - 20 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 156870 0.82 0.038723
Target:  5'- cGCCUGCCCCCGCCuGCUcccuGCccuCCGCCu -3'
miRNA:   3'- aCGGACGGGGGCGGcCGG----UGu--GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 46948 0.74 0.133237
Target:  5'- aGCCacagggUGCCCgcguauuUCGCCGGCCcggcCGCCGCCa -3'
miRNA:   3'- aCGG------ACGGG-------GGCGGCCGGu---GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 130499 0.73 0.157782
Target:  5'- gGCUacuuUGCCCCCGCgggaGGCUACuACgCGCCg -3'
miRNA:   3'- aCGG----ACGGGGGCGg---CCGGUG-UG-GCGG- -5'
28727 5' -66.7 NC_006146.1 + 152273 0.66 0.482116
Target:  5'- cUGCCUGgagugCUCUGCUGGCCACcgaagguuuggucgcCCGCUg -3'
miRNA:   3'- -ACGGACg----GGGGCGGCCGGUGu--------------GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 128141 0.78 0.080034
Target:  5'- cGCCUGCaCCUGUCGGCCcUGCUGCCg -3'
miRNA:   3'- aCGGACGgGGGCGGCCGGuGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 153473 0.77 0.084087
Target:  5'- cGCCUGCCUCCGUcgaCGGCgCACaaugGCCGCUg -3'
miRNA:   3'- aCGGACGGGGGCG---GCCG-GUG----UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 78802 0.76 0.10486
Target:  5'- gGCCcGCCCCCcagcagcaGCCccaGGCCGgGCCGCCc -3'
miRNA:   3'- aCGGaCGGGGG--------CGG---CCGGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 161000 0.76 0.107447
Target:  5'- cGUC-GCCuCCUGCCuGGCCGuCACCGCCu -3'
miRNA:   3'- aCGGaCGG-GGGCGG-CCGGU-GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 55714 0.76 0.110093
Target:  5'- gGCuCUGCCCgCCGCUGGCCu--CCGCg -3'
miRNA:   3'- aCG-GACGGG-GGCGGCCGGuguGGCGg -5'
28727 5' -66.7 NC_006146.1 + 130456 0.75 0.130389
Target:  5'- gGCCauUGCCgcaCCCGCCuacggGGCCGCuGCCGCCc -3'
miRNA:   3'- aCGG--ACGG---GGGCGG-----CCGGUG-UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 8867 0.75 0.124261
Target:  5'- aGCCUGCCCCCGCCc-CCAgGCUcCCa -3'
miRNA:   3'- aCGGACGGGGGCGGccGGUgUGGcGG- -5'
28727 5' -66.7 NC_006146.1 + 9468 0.76 0.110093
Target:  5'- cGCCUuggGUUCCCGCgGgGCCACAcCCGCCu -3'
miRNA:   3'- aCGGA---CGGGGGCGgC-CGGUGU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 131053 0.79 0.060886
Target:  5'- gGCacacaGCCCCCGCCGGCCcACugugcggccgagGCCGCCg -3'
miRNA:   3'- aCGga---CGGGGGCGGCCGG-UG------------UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 127253 0.75 0.126985
Target:  5'- aGCCggGCCCCUcuccccaGgCGGCCACGCCccGCCg -3'
miRNA:   3'- aCGGa-CGGGGG-------CgGCCGGUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 44712 0.78 0.070705
Target:  5'- gGCCgugGCCCCCGCUGGCCgGCcugaugcggugGCCGCg -3'
miRNA:   3'- aCGGa--CGGGGGCGGCCGG-UG-----------UGGCGg -5'
28727 5' -66.7 NC_006146.1 + 56595 0.76 0.107447
Target:  5'- cGCCgaGCCCgCCGCCGGUCuccuCGCCGgCg -3'
miRNA:   3'- aCGGa-CGGG-GGCGGCCGGu---GUGGCgG- -5'
28727 5' -66.7 NC_006146.1 + 95408 0.75 0.130389
Target:  5'- cGCUggUGCUCuuGCCGGCC-C-CCGCCg -3'
miRNA:   3'- aCGG--ACGGGggCGGCCGGuGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 53014 0.74 0.133557
Target:  5'- gGCCcuggGCCUCacgcgGCUGGCCGCGgCCGCCg -3'
miRNA:   3'- aCGGa---CGGGGg----CGGCCGGUGU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 160162 0.78 0.076169
Target:  5'- aGCCgcaugGCCCCgGCUGGCuCugGCUGCCc -3'
miRNA:   3'- aCGGa----CGGGGgCGGCCG-GugUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 160600 0.77 0.090534
Target:  5'- gUGCUUGCCCCCgagGUCGGCCGCcugGCaUGCCa -3'
miRNA:   3'- -ACGGACGGGGG---CGGCCGGUG---UG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.