miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 124730 0.66 0.749471
Target:  5'- gCCGCucuCUGGCcccACCCgaGUUCCUGGgGc -3'
miRNA:   3'- -GGUGuu-GGCCG---UGGGg-CGAGGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 4898 0.66 0.753135
Target:  5'- cCCACAACCGcauGCAuCCCUacucuuuggaucccuGCUCCuccucgUGGCa -3'
miRNA:   3'- -GGUGUUGGC---CGU-GGGG---------------CGAGG------ACCGc -5'
28728 3' -61.2 NC_006146.1 + 23766 0.66 0.730938
Target:  5'- gCCGCGGCCgagaauGGCGgCCUGCgcgUCUGGgGc -3'
miRNA:   3'- -GGUGUUGG------CCGUgGGGCGa--GGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 23520 0.66 0.721551
Target:  5'- cCCGCcgugAACuCGGgACuCCCGUgUCUGGCGg -3'
miRNA:   3'- -GGUG----UUG-GCCgUG-GGGCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 23283 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 50290 0.66 0.698755
Target:  5'- aCACGACCgaggggaaguugguGGUccagaagACCCCGCUCCUGu-- -3'
miRNA:   3'- gGUGUUGG--------------CCG-------UGGGGCGAGGACcgc -5'
28728 3' -61.2 NC_006146.1 + 11576 0.66 0.702577
Target:  5'- gCACGagacGCCGGCcaGCCUcaacuaCGaCUCCUGGCc -3'
miRNA:   3'- gGUGU----UGGCCG--UGGG------GC-GAGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 933 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 1865 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 2797 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 3729 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 68040 0.66 0.758601
Target:  5'- gCCACGACCaGGUGgCggCUGC-CCUGGCu -3'
miRNA:   3'- -GGUGUUGG-CCGUgG--GGCGaGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 22815 0.66 0.712095
Target:  5'- aCCugGGCgGGguCUuuGC-CCUGGUGc -3'
miRNA:   3'- -GGugUUGgCCguGGggCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 165671 0.66 0.712095
Target:  5'- cCCACAgccccgagGCCGGCaaggaccugcACCCCuaGCUCCcccaGGCc -3'
miRNA:   3'- -GGUGU--------UGGCCG----------UGGGG--CGAGGa---CCGc -5'
28728 3' -61.2 NC_006146.1 + 42065 0.66 0.758601
Target:  5'- gCCugGcCgGGCuuaCCUGCUCCUGGa- -3'
miRNA:   3'- -GGugUuGgCCGug-GGGCGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 40989 0.66 0.721551
Target:  5'- gCCGC-GCCGGCGCCCCag----GGCGc -3'
miRNA:   3'- -GGUGuUGGCCGUGGGGcgaggaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 18369 0.66 0.758601
Target:  5'- -gGCAugCu-CACCCUGgUCCUGGUGg -3'
miRNA:   3'- ggUGUugGccGUGGGGCgAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 24384 0.67 0.683388
Target:  5'- uCCAgGGCgCGGCGCCuUCGCUCUccgGGUu -3'
miRNA:   3'- -GGUgUUG-GCCGUGG-GGCGAGGa--CCGc -5'
28728 3' -61.2 NC_006146.1 + 68011 0.67 0.692046
Target:  5'- aCACGGCCccuGGCGuccCCCUGCggcugcuUCUUGGCGc -3'
miRNA:   3'- gGUGUUGG---CCGU---GGGGCG-------AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 14290 0.67 0.683388
Target:  5'- gCGCGugCaGCGCCCUGUcCCUGGa- -3'
miRNA:   3'- gGUGUugGcCGUGGGGCGaGGACCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.