Results 1 - 20 of 317 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 167082 | 0.66 | 0.663477 |
Target: 5'- cGggGGuGCCcCGCcuGGCCugaCCCAGAccuGACu -3' miRNA: 3'- aCuuCC-CGGuGCG--CCGG---GGGUCU---CUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 11546 | 0.66 | 0.663477 |
Target: 5'- ----uGGCCAaucaGCGGUCCCUaagGGGGGCu -3' miRNA: 3'- acuucCCGGUg---CGCCGGGGG---UCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 119333 | 0.66 | 0.663477 |
Target: 5'- ---cGGGCCccucccgGCGGCgCCCAGGGuCa -3' miRNA: 3'- acuuCCCGGug-----CGCCGgGGGUCUCuG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 15307 | 0.66 | 0.663477 |
Target: 5'- gGAGGGGCCGgaggccagcccCgGUGuGCCCCUGGcGGGCg -3' miRNA: 3'- aCUUCCCGGU-----------G-CGC-CGGGGGUC-UCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 64864 | 0.66 | 0.663477 |
Target: 5'- aGAAGGGUCGgGUcuguguuuugaGGCCUacgaCGGGGACc -3' miRNA: 3'- aCUUCCCGGUgCG-----------CCGGGg---GUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 556 | 0.66 | 0.663477 |
Target: 5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3' miRNA: 3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 1487 | 0.66 | 0.663477 |
Target: 5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3' miRNA: 3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 2419 | 0.66 | 0.663477 |
Target: 5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3' miRNA: 3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 3351 | 0.66 | 0.663477 |
Target: 5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3' miRNA: 3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 123256 | 0.66 | 0.663477 |
Target: 5'- cGcuGGGCCGgGCcGCggCCAGAGACg -3' miRNA: 3'- aCuuCCCGGUgCGcCGggGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 137731 | 0.66 | 0.663477 |
Target: 5'- cGAGcGGCgGCGCGGCggugCCCAGccGGGCc -3' miRNA: 3'- aCUUcCCGgUGCGCCGg---GGGUC--UCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 149783 | 0.66 | 0.663477 |
Target: 5'- aGAAGGuCUuCuCGGCCUCCAGGGAg -3' miRNA: 3'- aCUUCCcGGuGcGCCGGGGGUCUCUg -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 47745 | 0.66 | 0.660544 |
Target: 5'- --cGGGGCCuccucGCGCgcccuggcgaguacGGCCUCCAGGGcCg -3' miRNA: 3'- acuUCCCGG-----UGCG--------------CCGGGGGUCUCuG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 127231 | 0.66 | 0.654672 |
Target: 5'- cGGAGGGCCugGagcgaaugcgagccgGGCCCCUcuccccAGGCg -3' miRNA: 3'- aCUUCCCGGugCg--------------CCGGGGGuc----UCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 150539 | 0.66 | 0.653693 |
Target: 5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3' miRNA: 3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 147461 | 0.66 | 0.653693 |
Target: 5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3' miRNA: 3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 144383 | 0.66 | 0.653693 |
Target: 5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3' miRNA: 3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 153617 | 0.66 | 0.653693 |
Target: 5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3' miRNA: 3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 153780 | 0.66 | 0.653693 |
Target: 5'- cGGAGGGCCugGC--CUgCgGGGGACa -3' miRNA: 3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 150702 | 0.66 | 0.653693 |
Target: 5'- cGGAGGGCCugGC--CUgCgGGGGACa -3' miRNA: 3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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