miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 167082 0.66 0.663477
Target:  5'- cGggGGuGCCcCGCcuGGCCugaCCCAGAccuGACu -3'
miRNA:   3'- aCuuCC-CGGuGCG--CCGG---GGGUCU---CUG- -5'
28729 3' -62.4 NC_006146.1 + 11546 0.66 0.663477
Target:  5'- ----uGGCCAaucaGCGGUCCCUaagGGGGGCu -3'
miRNA:   3'- acuucCCGGUg---CGCCGGGGG---UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 119333 0.66 0.663477
Target:  5'- ---cGGGCCccucccgGCGGCgCCCAGGGuCa -3'
miRNA:   3'- acuuCCCGGug-----CGCCGgGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 15307 0.66 0.663477
Target:  5'- gGAGGGGCCGgaggccagcccCgGUGuGCCCCUGGcGGGCg -3'
miRNA:   3'- aCUUCCCGGU-----------G-CGC-CGGGGGUC-UCUG- -5'
28729 3' -62.4 NC_006146.1 + 64864 0.66 0.663477
Target:  5'- aGAAGGGUCGgGUcuguguuuugaGGCCUacgaCGGGGACc -3'
miRNA:   3'- aCUUCCCGGUgCG-----------CCGGGg---GUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 556 0.66 0.663477
Target:  5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3'
miRNA:   3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 1487 0.66 0.663477
Target:  5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3'
miRNA:   3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 2419 0.66 0.663477
Target:  5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3'
miRNA:   3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 3351 0.66 0.663477
Target:  5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3'
miRNA:   3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 123256 0.66 0.663477
Target:  5'- cGcuGGGCCGgGCcGCggCCAGAGACg -3'
miRNA:   3'- aCuuCCCGGUgCGcCGggGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 137731 0.66 0.663477
Target:  5'- cGAGcGGCgGCGCGGCggugCCCAGccGGGCc -3'
miRNA:   3'- aCUUcCCGgUGCGCCGg---GGGUC--UCUG- -5'
28729 3' -62.4 NC_006146.1 + 149783 0.66 0.663477
Target:  5'- aGAAGGuCUuCuCGGCCUCCAGGGAg -3'
miRNA:   3'- aCUUCCcGGuGcGCCGGGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 47745 0.66 0.660544
Target:  5'- --cGGGGCCuccucGCGCgcccuggcgaguacGGCCUCCAGGGcCg -3'
miRNA:   3'- acuUCCCGG-----UGCG--------------CCGGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 127231 0.66 0.654672
Target:  5'- cGGAGGGCCugGagcgaaugcgagccgGGCCCCUcuccccAGGCg -3'
miRNA:   3'- aCUUCCCGGugCg--------------CCGGGGGuc----UCUG- -5'
28729 3' -62.4 NC_006146.1 + 150539 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 147461 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 144383 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 153617 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 153780 0.66 0.653693
Target:  5'- cGGAGGGCCugGC--CUgCgGGGGACa -3'
miRNA:   3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 150702 0.66 0.653693
Target:  5'- cGGAGGGCCugGC--CUgCgGGGGACa -3'
miRNA:   3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.