Results 21 - 40 of 317 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 142584 | 0.75 | 0.192721 |
Target: 5'- cGGgcGGGGCCA-G-GGCCUCCAGAGGCa -3' miRNA: 3'- aCU--UCCCGGUgCgCCGGGGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 168457 | 0.75 | 0.202133 |
Target: 5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3' miRNA: 3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 155560 | 0.74 | 0.249539 |
Target: 5'- gGAGccGGGCuCGCGCGgggcGCCCgCCAGGGGCa -3' miRNA: 3'- aCUU--CCCG-GUGCGC----CGGG-GGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 24045 | 0.74 | 0.238266 |
Target: 5'- gGcGGGGUgACGCGGCCCCgAGccAGGCc -3' miRNA: 3'- aCuUCCCGgUGCGCCGGGGgUC--UCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 3734 | 0.74 | 0.238266 |
Target: 5'- -uGGGGGCCGCGUGGCCcuucagCCCGGGGu- -3' miRNA: 3'- acUUCCCGGUGCGCCGG------GGGUCUCug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 52838 | 0.74 | 0.238266 |
Target: 5'- cGGAGGGCCGagccgcCGCcGCCCCCgcccGGGGGCu -3' miRNA: 3'- aCUUCCCGGU------GCGcCGGGGG----UCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 67591 | 0.73 | 0.26727 |
Target: 5'- uUGggGGGCCcgugGCGUuuGGCCUCCGGugcgaGGACa -3' miRNA: 3'- -ACuuCCCGG----UGCG--CCGGGGGUC-----UCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 109418 | 0.73 | 0.255339 |
Target: 5'- cGGucAGGGCC-CGUuuGGCCCCCucaaaaAGAGACa -3' miRNA: 3'- aCU--UCCCGGuGCG--CCGGGGG------UCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 33483 | 0.73 | 0.26727 |
Target: 5'- gGAAGGGagggGCGUGGUCCCCGG-GACc -3' miRNA: 3'- aCUUCCCgg--UGCGCCGGGGGUCuCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 92500 | 0.73 | 0.255339 |
Target: 5'- aGAAGGGCC-CaGCGGCUCCUaucAGAGgACg -3' miRNA: 3'- aCUUCCCGGuG-CGCCGGGGG---UCUC-UG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 167640 | 0.73 | 0.273402 |
Target: 5'- cGcGGGGCCcgGCGCGuGCCgggggCCCGGGGGCg -3' miRNA: 3'- aCuUCCCGG--UGCGC-CGG-----GGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 2985 | 0.72 | 0.326545 |
Target: 5'- aGAAGGGucucuCCACGCGccgguGCCCCCGcGAGGg -3' miRNA: 3'- aCUUCCC-----GGUGCGC-----CGGGGGU-CUCUg -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 168572 | 0.72 | 0.299061 |
Target: 5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3' miRNA: 3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 169504 | 0.72 | 0.299061 |
Target: 5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3' miRNA: 3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 1513 | 0.72 | 0.319502 |
Target: 5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3' miRNA: 3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 6424 | 0.72 | 0.326545 |
Target: 5'- uUGGcccAGGGCCAUGUGGgCCCUGGGGuCc -3' miRNA: 3'- -ACU---UCCCGGUGCGCCgGGGGUCUCuG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 582 | 0.72 | 0.319502 |
Target: 5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3' miRNA: 3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 3377 | 0.72 | 0.319502 |
Target: 5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3' miRNA: 3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 2445 | 0.72 | 0.319502 |
Target: 5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3' miRNA: 3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 121349 | 0.72 | 0.316717 |
Target: 5'- aUGcuGGGCCugGCcggcguggccuccGCCCCCAGAGGa -3' miRNA: 3'- -ACuuCCCGGugCGc------------CGGGGGUCUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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