miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 32926 0.68 0.499263
Target:  5'- aCCCCGcCG-GCCcccggGAGGCCc-GGCCGCg -3'
miRNA:   3'- aGGGGC-GCaCGG-----CUCCGGcaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 104860 0.68 0.508411
Target:  5'- aCUuuGCGUGCCuGAGGCaua-ACCACa -3'
miRNA:   3'- aGGggCGCACGG-CUCCGgcacUGGUG- -5'
28731 5' -63 NC_006146.1 + 117274 0.68 0.508411
Target:  5'- gCCCCGCGauccUGCCGAc-CCGgaGACCACc -3'
miRNA:   3'- aGGGGCGC----ACGGCUccGGCa-CUGGUG- -5'
28731 5' -63 NC_006146.1 + 4376 0.68 0.508411
Target:  5'- gCCCCGCGgGCUccccAGGCCGacGCCAUg -3'
miRNA:   3'- aGGGGCGCaCGGc---UCCGGCacUGGUG- -5'
28731 5' -63 NC_006146.1 + 16157 0.68 0.517629
Target:  5'- aCUCCGCGUaggaaGCCGAGcguugucuuGCUGcUGGCCGCc -3'
miRNA:   3'- aGGGGCGCA-----CGGCUC---------CGGC-ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 45080 0.68 0.523192
Target:  5'- gCCUCGUggggagagggaggGUGCCGGccauucuccggcucGGCCGgUGACCGCc -3'
miRNA:   3'- aGGGGCG-------------CACGGCU--------------CCGGC-ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 61608 0.68 0.536258
Target:  5'- --gCCGCG-GCCGGGGCCGaGAUCc- -3'
miRNA:   3'- aggGGCGCaCGGCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 47385 0.68 0.536258
Target:  5'- -aCCCGCGacccGCCuGGGGucgaCCGUGGCCAg -3'
miRNA:   3'- agGGGCGCa---CGG-CUCC----GGCACUGGUg -5'
28731 5' -63 NC_006146.1 + 120500 0.68 0.536258
Target:  5'- gUCCCUgGCG-GCCGAGGaCGcGAgCCGCg -3'
miRNA:   3'- -AGGGG-CGCaCGGCUCCgGCaCU-GGUG- -5'
28731 5' -63 NC_006146.1 + 136857 0.68 0.536258
Target:  5'- aCCCC-CG-GCCGgcauAGGCCccggGACCACg -3'
miRNA:   3'- aGGGGcGCaCGGC----UCCGGca--CUGGUG- -5'
28731 5' -63 NC_006146.1 + 135216 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136052 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135959 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135866 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135773 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135495 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135588 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135402 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135309 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135681 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.