miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 105837 0.67 0.564617
Target:  5'- gCCCCGCGccGCCGAGuagacGCaGUG-CCGCu -3'
miRNA:   3'- aGGGGCGCa-CGGCUC-----CGgCACuGGUG- -5'
28731 5' -63 NC_006146.1 + 109089 0.67 0.574161
Target:  5'- aCCCCGCccGUGCCGu-GCCGgcgcGcCCACu -3'
miRNA:   3'- aGGGGCG--CACGGCucCGGCa---CuGGUG- -5'
28731 5' -63 NC_006146.1 + 114068 0.7 0.396151
Target:  5'- cCCCCGCc-GCCaGAGGCCGccucgggGGCCAg -3'
miRNA:   3'- aGGGGCGcaCGG-CUCCGGCa------CUGGUg -5'
28731 5' -63 NC_006146.1 + 115542 0.71 0.349996
Target:  5'- gUCCCgCGCGcggugGCgGGGGCUGgaggcGACCGCg -3'
miRNA:   3'- -AGGG-GCGCa----CGgCUCCGGCa----CUGGUG- -5'
28731 5' -63 NC_006146.1 + 115965 0.67 0.593355
Target:  5'- gCCCCGCGggcagacGUCGAGGCCuacuGCCGg -3'
miRNA:   3'- aGGGGCGCa------CGGCUCCGGcac-UGGUg -5'
28731 5' -63 NC_006146.1 + 116653 0.66 0.641673
Target:  5'- uUUCCCGCcUGaCCGGGGCCGc--CCAg -3'
miRNA:   3'- -AGGGGCGcAC-GGCUCCGGCacuGGUg -5'
28731 5' -63 NC_006146.1 + 117274 0.68 0.508411
Target:  5'- gCCCCGCGauccUGCCGAc-CCGgaGACCACc -3'
miRNA:   3'- aGGGGCGC----ACGGCUccGGCa-CUGGUG- -5'
28731 5' -63 NC_006146.1 + 117717 0.72 0.321418
Target:  5'- cCCCCaaG-GCCGGGGCCGaGGCCGa -3'
miRNA:   3'- aGGGGcgCaCGGCUCCGGCaCUGGUg -5'
28731 5' -63 NC_006146.1 + 117908 0.69 0.446049
Target:  5'- cCCCCGCG-GCCacGGCCGgcagGuCCGCc -3'
miRNA:   3'- aGGGGCGCaCGGcuCCGGCa---CuGGUG- -5'
28731 5' -63 NC_006146.1 + 120500 0.68 0.536258
Target:  5'- gUCCCUgGCG-GCCGAGGaCGcGAgCCGCg -3'
miRNA:   3'- -AGGGG-CGCaCGGCUCCgGCaCU-GGUG- -5'
28731 5' -63 NC_006146.1 + 120558 0.71 0.349996
Target:  5'- aUCCCCagGCuG-GCCGAGGCCGcgGAUgGCa -3'
miRNA:   3'- -AGGGG--CG-CaCGGCUCCGGCa-CUGgUG- -5'
28731 5' -63 NC_006146.1 + 122786 0.67 0.580865
Target:  5'- aCUCCaagagaagagacggGCG-GCCGAGGCCGcgcugucGGCCGCc -3'
miRNA:   3'- aGGGG--------------CGCaCGGCUCCGGCa------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 123249 0.71 0.357417
Target:  5'- gCCgCCGCGcuggGCCG-GGCCGcGGCCAg -3'
miRNA:   3'- aGG-GGCGCa---CGGCuCCGGCaCUGGUg -5'
28731 5' -63 NC_006146.1 + 125077 0.66 0.651343
Target:  5'- aUCCCCGUcu-CCGucuucgaggcGGCCGUGGCgGCg -3'
miRNA:   3'- -AGGGGCGcacGGCu---------CCGGCACUGgUG- -5'
28731 5' -63 NC_006146.1 + 126140 0.68 0.49019
Target:  5'- uUCCCCGCccGCCG-GGCCccgacaACCACa -3'
miRNA:   3'- -AGGGGCGcaCGGCuCCGGcac---UGGUG- -5'
28731 5' -63 NC_006146.1 + 126173 0.67 0.583742
Target:  5'- -gCCCGCG-GCCaccgcaucAGGCCGgccagcgggGGCCACg -3'
miRNA:   3'- agGGGCGCaCGGc-------UCCGGCa--------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 127411 0.66 0.622319
Target:  5'- gCCCCGCc-GCCGGaGCCGgugucaacGGCCGCc -3'
miRNA:   3'- aGGGGCGcaCGGCUcCGGCa-------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 127578 0.72 0.294621
Target:  5'- gCCCUGgGcgGCCGAGGCCGcgccGGCCGg -3'
miRNA:   3'- aGGGGCgCa-CGGCUCCGGCa---CUGGUg -5'
28731 5' -63 NC_006146.1 + 128744 0.71 0.342685
Target:  5'- aUUCCCGCaggggGUGuCCGAGGCCuucuucuggaguGUGGCCAg -3'
miRNA:   3'- -AGGGGCG-----CAC-GGCUCCGG------------CACUGGUg -5'
28731 5' -63 NC_006146.1 + 130509 0.67 0.597207
Target:  5'- cCCCCGCGggaggcuacuacgcGCCG-GGCgGcGACCAg -3'
miRNA:   3'- aGGGGCGCa-------------CGGCuCCGgCaCUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.