miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 42752 0.69 0.446049
Target:  5'- aUCgCCUGCGgcagcaggGCCGAcaggugcaggcGGCgCGUGGCCGCc -3'
miRNA:   3'- -AG-GGGCGCa-------CGGCU-----------CCG-GCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 44296 0.66 0.651343
Target:  5'- aCCaCCGCcaaaccgguaguGgggGCUGGGGCCGUGGCaGCc -3'
miRNA:   3'- aGG-GGCG------------Ca--CGGCUCCGGCACUGgUG- -5'
28731 5' -63 NC_006146.1 + 44720 0.7 0.429022
Target:  5'- cCCCCGCuGgccgGCCuGAuGCgGUGGCCGCg -3'
miRNA:   3'- aGGGGCG-Ca---CGG-CUcCGgCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 45080 0.68 0.523192
Target:  5'- gCCUCGUggggagagggaggGUGCCGGccauucuccggcucGGCCGgUGACCGCc -3'
miRNA:   3'- aGGGGCG-------------CACGGCU--------------CCGGC-ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 46388 0.67 0.555115
Target:  5'- cCCCCGUcccucGCCaGGGCCGaGACCAg -3'
miRNA:   3'- aGGGGCGca---CGGcUCCGGCaCUGGUg -5'
28731 5' -63 NC_006146.1 + 47038 0.66 0.660999
Target:  5'- gCCCUGgGUGCgagaaGGGGCCGgucGCCGg -3'
miRNA:   3'- aGGGGCgCACGg----CUCCGGCac-UGGUg -5'
28731 5' -63 NC_006146.1 + 47385 0.68 0.536258
Target:  5'- -aCCCGCGacccGCCuGGGGucgaCCGUGGCCAg -3'
miRNA:   3'- agGGGCGCa---CGG-CUCC----GGCACUGGUg -5'
28731 5' -63 NC_006146.1 + 53525 0.66 0.602992
Target:  5'- gCCgCGCGUGUgaAGGCCGcgagGACCGa -3'
miRNA:   3'- aGGgGCGCACGgcUCCGGCa---CUGGUg -5'
28731 5' -63 NC_006146.1 + 55761 0.66 0.651343
Target:  5'- gCCCgGCGgcggGCCaGGGGCagCGaGGCCACc -3'
miRNA:   3'- aGGGgCGCa---CGG-CUCCG--GCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 56158 0.66 0.641673
Target:  5'- cUCCCCGCG-GCCGuccuugaggauGcGCCGauacucGGCCGCc -3'
miRNA:   3'- -AGGGGCGCaCGGCu----------C-CGGCa-----CUGGUG- -5'
28731 5' -63 NC_006146.1 + 57214 0.7 0.429022
Target:  5'- gUCCCCG-G-GCCgGAGGCCG-GGCC-Cg -3'
miRNA:   3'- -AGGGGCgCaCGG-CUCCGGCaCUGGuG- -5'
28731 5' -63 NC_006146.1 + 61608 0.68 0.536258
Target:  5'- --gCCGCG-GCCGGGGCCGaGAUCc- -3'
miRNA:   3'- aggGGCGCaCGGCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 68724 0.66 0.631996
Target:  5'- gUCCCCgagagcugucGCGgggugGUgGAGGCCcagGUGGCCAa -3'
miRNA:   3'- -AGGGG----------CGCa----CGgCUCCGG---CACUGGUg -5'
28731 5' -63 NC_006146.1 + 69777 0.67 0.564617
Target:  5'- cCCCCGUGUaGCCGGGaUCGaUGAugcCCACg -3'
miRNA:   3'- aGGGGCGCA-CGGCUCcGGC-ACU---GGUG- -5'
28731 5' -63 NC_006146.1 + 70112 0.67 0.574161
Target:  5'- -aCCCGUuUGCUaAGGCUGUG-CCACu -3'
miRNA:   3'- agGGGCGcACGGcUCCGGCACuGGUG- -5'
28731 5' -63 NC_006146.1 + 70205 0.76 0.16148
Target:  5'- cCCCCGCaGcGCCGGGuGCCGagGGCCGCg -3'
miRNA:   3'- aGGGGCG-CaCGGCUC-CGGCa-CUGGUG- -5'
28731 5' -63 NC_006146.1 + 71673 0.67 0.590468
Target:  5'- -gCCCgagacgguggucggGCGcGCCGAGGCCGcGGCCu- -3'
miRNA:   3'- agGGG--------------CGCaCGGCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 71777 0.66 0.622319
Target:  5'- cCCCUGUGgagacGCCuGAGGCCGgagGGCagGCg -3'
miRNA:   3'- aGGGGCGCa----CGG-CUCCGGCa--CUGg-UG- -5'
28731 5' -63 NC_006146.1 + 88389 0.67 0.564617
Target:  5'- aCCagGCGUGC--AGGCCcUGACCACg -3'
miRNA:   3'- aGGggCGCACGgcUCCGGcACUGGUG- -5'
28731 5' -63 NC_006146.1 + 104860 0.68 0.508411
Target:  5'- aCUuuGCGUGCCuGAGGCaua-ACCACa -3'
miRNA:   3'- aGGggCGCACGG-CUCCGgcacUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.