miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 47385 0.68 0.536258
Target:  5'- -aCCCGCGacccGCCuGGGGucgaCCGUGGCCAg -3'
miRNA:   3'- agGGGCGCa---CGG-CUCC----GGCACUGGUg -5'
28731 5' -63 NC_006146.1 + 170441 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 168516 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 155138 0.7 0.403405
Target:  5'- gUCCCCGCGgcGUCGcagcagcGGGCCaG-GGCCACg -3'
miRNA:   3'- -AGGGGCGCa-CGGC-------UCCGG-CaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136238 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135588 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 168578 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 42106 0.72 0.307797
Target:  5'- cUCCCUGUGUgGCCGAucacgcuucGGCCcugcUGGCCACa -3'
miRNA:   3'- -AGGGGCGCA-CGGCU---------CCGGc---ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 135495 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 131062 0.73 0.258324
Target:  5'- cCCCCGCcggcccacugugcgGCCGAGGCCGccgGGCCGu -3'
miRNA:   3'- aGGGGCGca------------CGGCUCCGGCa--CUGGUg -5'
28731 5' -63 NC_006146.1 + 169510 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 135216 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 132745 0.69 0.463447
Target:  5'- gCCCCG-GUucuCCGGGGCCGgauGCCGCg -3'
miRNA:   3'- aGGGGCgCAc--GGCUCCGGCac-UGGUG- -5'
28731 5' -63 NC_006146.1 + 169448 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 167646 0.69 0.445189
Target:  5'- gCCCggCGCGUGCCgGGGGCCcgggggcGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGG-CUCCGG-------CACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 137900 0.7 0.412384
Target:  5'- gUCCCCGUGgacaggGCCGGGGguuCCGgggGcaGCCGCg -3'
miRNA:   3'- -AGGGGCGCa-----CGGCUCC---GGCa--C--UGGUG- -5'
28731 5' -63 NC_006146.1 + 136610 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136331 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135959 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135681 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.