miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 116653 0.66 0.641673
Target:  5'- uUUCCCGCcUGaCCGGGGCCGc--CCAg -3'
miRNA:   3'- -AGGGGCGcAC-GGCUCCGGCacuGGUg -5'
28731 5' -63 NC_006146.1 + 13308 0.66 0.650376
Target:  5'- cCCCCaCGUGCUGggcaccaGGGCgGUGgagucgGCCGCg -3'
miRNA:   3'- aGGGGcGCACGGC-------UCCGgCAC------UGGUG- -5'
28731 5' -63 NC_006146.1 + 169103 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137167 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136888 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136981 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135681 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137539 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135959 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137446 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 122786 0.67 0.580865
Target:  5'- aCUCCaagagaagagacggGCG-GCCGAGGCCGcgcugucGGCCGCc -3'
miRNA:   3'- aGGGG--------------CGCaCGGCUCCGGCa------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 15929 0.67 0.583742
Target:  5'- gCCCUGCG---CGAGGCCGUgcuGACCGu -3'
miRNA:   3'- aGGGGCGCacgGCUCCGGCA---CUGGUg -5'
28731 5' -63 NC_006146.1 + 126173 0.67 0.583742
Target:  5'- -gCCCGCG-GCCaccgcaucAGGCCGgccagcgggGGCCACg -3'
miRNA:   3'- agGGGCGCaCGGc-------UCCGGCa--------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 137074 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 71673 0.67 0.590468
Target:  5'- -gCCCgagacgguggucggGCGcGCCGAGGCCGcGGCCu- -3'
miRNA:   3'- agGGG--------------CGCaCGGCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 18384 0.67 0.593355
Target:  5'- gUCCUgGUG-GCCGGGGUgGUGAUCc- -3'
miRNA:   3'- -AGGGgCGCaCGGCUCCGgCACUGGug -5'
28731 5' -63 NC_006146.1 + 137353 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136052 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135773 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135866 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.