miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 57214 0.7 0.429022
Target:  5'- gUCCCCG-G-GCCgGAGGCCG-GGCC-Cg -3'
miRNA:   3'- -AGGGGCgCaCGG-CUCCGGCaCUGGuG- -5'
28731 5' -63 NC_006146.1 + 167646 0.69 0.445189
Target:  5'- gCCCggCGCGUGCCgGGGGCCcgggggcGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGG-CUCCGG-------CACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 42752 0.69 0.446049
Target:  5'- aUCgCCUGCGgcagcaggGCCGAcaggugcaggcGGCgCGUGGCCGCc -3'
miRNA:   3'- -AG-GGGCGCa-------CGGCU-----------CCG-GCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 117908 0.69 0.446049
Target:  5'- cCCCCGCG-GCCacGGCCGgcagGuCCGCc -3'
miRNA:   3'- aGGGGCGCaCGGcuCCGGCa---CuGGUG- -5'
28731 5' -63 NC_006146.1 + 14101 0.69 0.446049
Target:  5'- gUCCCCaggGCGggaUGUCGGGGCUGcUGGCgGCg -3'
miRNA:   3'- -AGGGG---CGC---ACGGCUCCGGC-ACUGgUG- -5'
28731 5' -63 NC_006146.1 + 24209 0.69 0.446049
Target:  5'- -gCCUGCGagguucUGuuGGGGCCGgGGCCGCc -3'
miRNA:   3'- agGGGCGC------ACggCUCCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 170379 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 169448 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 167584 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 168516 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 33090 0.69 0.463447
Target:  5'- gCCCUGCGgcuCUGGGGCagccggGUGGCCGCc -3'
miRNA:   3'- aGGGGCGCac-GGCUCCGg-----CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 132745 0.69 0.463447
Target:  5'- gCCCCG-GUucuCCGGGGCCGgauGCCGCg -3'
miRNA:   3'- aGGGGCgCAc--GGCUCCGGCac-UGGUG- -5'
28731 5' -63 NC_006146.1 + 40958 0.69 0.472278
Target:  5'- aCCCCaggucCGUGCCGuAGaccGCCGUGguGCCGCg -3'
miRNA:   3'- aGGGGc----GCACGGC-UC---CGGCAC--UGGUG- -5'
28731 5' -63 NC_006146.1 + 165921 0.69 0.472278
Target:  5'- aCCCCGCGUuagugaaggccGCCagGAGGCucuCGUGGCCc- -3'
miRNA:   3'- aGGGGCGCA-----------CGG--CUCCG---GCACUGGug -5'
28731 5' -63 NC_006146.1 + 31830 0.69 0.472278
Target:  5'- cCCCCGCGccaCCaGGGCCcguaugGUGGCCGCc -3'
miRNA:   3'- aGGGGCGCac-GGcUCCGG------CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 168578 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 157497 0.68 0.49019
Target:  5'- gCCuuGCagaccugGCUGAGGCagucCGUGGCCGCg -3'
miRNA:   3'- aGGggCGca-----CGGCUCCG----GCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 169510 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 170441 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 126140 0.68 0.49019
Target:  5'- uUCCCCGCccGCCG-GGCCccgacaACCACa -3'
miRNA:   3'- -AGGGGCGcaCGGCuCCGGcac---UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.