Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28731 | 5' | -63 | NC_006146.1 | + | 44720 | 0.7 | 0.429022 |
Target: 5'- cCCCCGCuGgccgGCCuGAuGCgGUGGCCGCg -3' miRNA: 3'- aGGGGCG-Ca---CGG-CUcCGgCACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 170379 | 0.69 | 0.454703 |
Target: 5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3' miRNA: 3'- aggGGCGCACGgCUCCGGCaCUGGug -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 169448 | 0.69 | 0.454703 |
Target: 5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3' miRNA: 3'- aggGGCGCACGgCUCCGGCaCUGGug -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 168516 | 0.69 | 0.454703 |
Target: 5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3' miRNA: 3'- aggGGCGCACGgCUCCGGCaCUGGug -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 167584 | 0.69 | 0.454703 |
Target: 5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3' miRNA: 3'- aggGGCGCACGgCUCCGGCaCUGGug -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 42752 | 0.69 | 0.446049 |
Target: 5'- aUCgCCUGCGgcagcaggGCCGAcaggugcaggcGGCgCGUGGCCGCc -3' miRNA: 3'- -AG-GGGCGCa-------CGGCU-----------CCG-GCACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 117908 | 0.69 | 0.446049 |
Target: 5'- cCCCCGCG-GCCacGGCCGgcagGuCCGCc -3' miRNA: 3'- aGGGGCGCaCGGcuCCGGCa---CuGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 167646 | 0.69 | 0.445189 |
Target: 5'- gCCCggCGCGUGCCgGGGGCCcgggggcGUGucCCGCg -3' miRNA: 3'- aGGG--GCGCACGG-CUCCGG-------CACu-GGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 33090 | 0.69 | 0.463447 |
Target: 5'- gCCCUGCGgcuCUGGGGCagccggGUGGCCGCc -3' miRNA: 3'- aGGGGCGCac-GGCUCCGg-----CACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 132745 | 0.69 | 0.463447 |
Target: 5'- gCCCCG-GUucuCCGGGGCCGgauGCCGCg -3' miRNA: 3'- aGGGGCgCAc--GGCUCCGGCac-UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 31830 | 0.69 | 0.472278 |
Target: 5'- cCCCCGCGccaCCaGGGCCcguaugGUGGCCGCc -3' miRNA: 3'- aGGGGCGCac-GGcUCCGG------CACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 165921 | 0.69 | 0.472278 |
Target: 5'- aCCCCGCGUuagugaaggccGCCagGAGGCucuCGUGGCCc- -3' miRNA: 3'- aGGGGCGCA-----------CGG--CUCCG---GCACUGGug -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 40958 | 0.69 | 0.472278 |
Target: 5'- aCCCCaggucCGUGCCGuAGaccGCCGUGguGCCGCg -3' miRNA: 3'- aGGGGc----GCACGGC-UC---CGGCAC--UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 24209 | 0.69 | 0.446049 |
Target: 5'- -gCCUGCGagguucUGuuGGGGCCGgGGCCGCc -3' miRNA: 3'- agGGGCGC------ACggCUCCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 14101 | 0.69 | 0.446049 |
Target: 5'- gUCCCCaggGCGggaUGUCGGGGCUGcUGGCgGCg -3' miRNA: 3'- -AGGGG---CGC---ACGGCUCCGGC-ACUGgUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 104860 | 0.68 | 0.508411 |
Target: 5'- aCUuuGCGUGCCuGAGGCaua-ACCACa -3' miRNA: 3'- aGGggCGCACGG-CUCCGgcacUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 126140 | 0.68 | 0.49019 |
Target: 5'- uUCCCCGCccGCCG-GGCCccgacaACCACa -3' miRNA: 3'- -AGGGGCGcaCGGCuCCGGcac---UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 32926 | 0.68 | 0.499263 |
Target: 5'- aCCCCGcCG-GCCcccggGAGGCCc-GGCCGCg -3' miRNA: 3'- aGGGGC-GCaCGG-----CUCCGGcaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 117274 | 0.68 | 0.508411 |
Target: 5'- gCCCCGCGauccUGCCGAc-CCGgaGACCACc -3' miRNA: 3'- aGGGGCGC----ACGGCUccGGCa-CUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 16157 | 0.68 | 0.517629 |
Target: 5'- aCUCCGCGUaggaaGCCGAGcguugucuuGCUGcUGGCCGCc -3' miRNA: 3'- aGGGGCGCA-----CGGCUC---------CGGC-ACUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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