miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 137539 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136424 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 45080 0.68 0.523192
Target:  5'- gCCUCGUggggagagggaggGUGCCGGccauucuccggcucGGCCGgUGACCGCc -3'
miRNA:   3'- aGGGGCG-------------CACGGCU--------------CCGGC-ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 137446 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 4376 0.68 0.508411
Target:  5'- gCCCCGCGgGCUccccAGGCCGacGCCAUg -3'
miRNA:   3'- aGGGGCGCaCGGc---UCCGGCacUGGUG- -5'
28731 5' -63 NC_006146.1 + 34068 0.67 0.583742
Target:  5'- gUCCCGUG-GCaCGGGGCCGgggGucccggggggcaGCCGCg -3'
miRNA:   3'- aGGGGCGCaCG-GCUCCGGCa--C------------UGGUG- -5'
28731 5' -63 NC_006146.1 + 135216 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 170188 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 169257 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 70112 0.67 0.574161
Target:  5'- -aCCCGUuUGCUaAGGCUGUG-CCACu -3'
miRNA:   3'- agGGGCGcACGGcUCCGGCACuGGUG- -5'
28731 5' -63 NC_006146.1 + 41826 0.67 0.573205
Target:  5'- gUCCCCuuucUGUGaaaacacCCG-GGCCGUGGCCAg -3'
miRNA:   3'- -AGGGGc---GCAC-------GGCuCCGGCACUGGUg -5'
28731 5' -63 NC_006146.1 + 105837 0.67 0.564617
Target:  5'- gCCCCGCGccGCCGAGuagacGCaGUG-CCGCu -3'
miRNA:   3'- aGGGGCGCa-CGGCUC-----CGgCACuGGUG- -5'
28731 5' -63 NC_006146.1 + 88389 0.67 0.564617
Target:  5'- aCCagGCGUGC--AGGCCcUGACCACg -3'
miRNA:   3'- aGGggCGCACGgcUCCGGcACUGGUG- -5'
28731 5' -63 NC_006146.1 + 137353 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137260 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136981 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136610 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136145 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135866 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135495 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.