miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 165921 0.69 0.472278
Target:  5'- aCCCCGCGUuagugaaggccGCCagGAGGCucuCGUGGCCc- -3'
miRNA:   3'- aGGGGCGCA-----------CGG--CUCCG---GCACUGGug -5'
28731 5' -63 NC_006146.1 + 159884 0.66 0.651343
Target:  5'- cUCCUCGCagaggGCCucGAGGCCGgGGCCc- -3'
miRNA:   3'- -AGGGGCGca---CGG--CUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 157567 0.7 0.429022
Target:  5'- cCUCCGCGUagGCCGcGGCCGacuCCACc -3'
miRNA:   3'- aGGGGCGCA--CGGCuCCGGCacuGGUG- -5'
28731 5' -63 NC_006146.1 + 157497 0.68 0.49019
Target:  5'- gCCuuGCagaccugGCUGAGGCagucCGUGGCCGCg -3'
miRNA:   3'- aGGggCGca-----CGGCUCCG----GCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 155138 0.7 0.403405
Target:  5'- gUCCCCGCGgcGUCGcagcagcGGGCCaG-GGCCACg -3'
miRNA:   3'- -AGGGGCGCa-CGGC-------UCCGG-CaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 150784 0.66 0.631996
Target:  5'- cCCCCaGCagGUGCCGGGccaCCGUGuCCAg -3'
miRNA:   3'- aGGGG-CG--CACGGCUCc--GGCACuGGUg -5'
28731 5' -63 NC_006146.1 + 150064 0.66 0.660999
Target:  5'- gUCUCgGCGauggagagGCaggggaaGAGGCCGuUGGCCACc -3'
miRNA:   3'- -AGGGgCGCa-------CGg------CUCCGGC-ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 146814 0.66 0.612649
Target:  5'- -aCCCGCGUcccaGgCGAGGCCGc-GCCAg -3'
miRNA:   3'- agGGGCGCA----CgGCUCCGGCacUGGUg -5'
28731 5' -63 NC_006146.1 + 137900 0.7 0.412384
Target:  5'- gUCCCCGUGgacaggGCCGGGGguuCCGgggGcaGCCGCg -3'
miRNA:   3'- -AGGGGCGCa-----CGGCUCC---GGCa--C--UGGUG- -5'
28731 5' -63 NC_006146.1 + 137539 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137446 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137353 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137260 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137167 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137074 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136981 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136888 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136857 0.68 0.536258
Target:  5'- aCCCC-CG-GCCGgcauAGGCCccggGACCACg -3'
miRNA:   3'- aGGGGcGCaCGGC----UCCGGca--CUGGUG- -5'
28731 5' -63 NC_006146.1 + 136795 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 136610 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.