miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 170441 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 170379 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 170188 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 170035 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 169510 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 169448 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 169257 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 169103 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 169055 0.66 0.612649
Target:  5'- cUCCCGUGUGCCuguggcacccGGCUGUGccccGCCAUg -3'
miRNA:   3'- aGGGGCGCACGGcu--------CCGGCAC----UGGUG- -5'
28731 5' -63 NC_006146.1 + 168578 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 168516 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 168325 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 168267 0.67 0.593355
Target:  5'- gUCCCCGcCGUGUggaCGAaGCCGUGcuCCAg -3'
miRNA:   3'- -AGGGGC-GCACG---GCUcCGGCACu-GGUg -5'
28731 5' -63 NC_006146.1 + 168171 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 167646 0.69 0.445189
Target:  5'- gCCCggCGCGUGCCgGGGGCCcgggggcGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGG-CUCCGG-------CACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 167584 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 167393 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 167239 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 166677 1.08 0.000963
Target:  5'- uUCCCCGCGUGCCGAGGCCGUGACCACc -3'
miRNA:   3'- -AGGGGCGCACGGCUCCGGCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 166532 0.73 0.28189
Target:  5'- gCCUgGgGaGCCcgcGGGGCCGUGGCCACg -3'
miRNA:   3'- aGGGgCgCaCGG---CUCCGGCACUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.