Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 57822 | 0.66 | 0.930227 |
Target: 5'- cGaGGCCGGGUGCUCcaaccuccaGGCAGAgaCa -3' miRNA: 3'- aC-CUGGUCCACGAGuca------UCGUCUgaG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 108408 | 0.66 | 0.930227 |
Target: 5'- aGGGCCAGGUGCUgc-UGGCAcGAg-- -3' miRNA: 3'- aCCUGGUCCACGAgucAUCGU-CUgag -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 61974 | 0.66 | 0.930227 |
Target: 5'- gGGGCCguugAGGcccacgucaccUGCUCGGUcgcuGCuGACUCg -3' miRNA: 3'- aCCUGG----UCC-----------ACGAGUCAu---CGuCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 167762 | 0.66 | 0.924878 |
Target: 5'- gGGGCCGGGUGggCGc--GCAuGGCUCg -3' miRNA: 3'- aCCUGGUCCACgaGUcauCGU-CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 168354 | 0.66 | 0.924878 |
Target: 5'- gUGGgcugaagaACCAGGUGCcCcgAGUAGguGuCUCg -3' miRNA: 3'- -ACC--------UGGUCCACGaG--UCAUCguCuGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 99791 | 0.66 | 0.924878 |
Target: 5'- gGGGCgCAGGUGuCUCGGaagGGCAccGGCg- -3' miRNA: 3'- aCCUG-GUCCAC-GAGUCa--UCGU--CUGag -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 130953 | 0.66 | 0.919285 |
Target: 5'- gGGACCcgGGGUGCU----GGCGGAaCUCc -3' miRNA: 3'- aCCUGG--UCCACGAgucaUCGUCU-GAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 156247 | 0.66 | 0.913449 |
Target: 5'- gUGGACgGGGUGCcgUGGUugGGCAGcaccaugaGCUCc -3' miRNA: 3'- -ACCUGgUCCACGa-GUCA--UCGUC--------UGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 141488 | 0.66 | 0.90105 |
Target: 5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3' miRNA: 3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 144566 | 0.66 | 0.90105 |
Target: 5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3' miRNA: 3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 147644 | 0.66 | 0.90105 |
Target: 5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3' miRNA: 3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 156877 | 0.66 | 0.90105 |
Target: 5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3' miRNA: 3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 153799 | 0.66 | 0.90105 |
Target: 5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3' miRNA: 3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 150721 | 0.66 | 0.90105 |
Target: 5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3' miRNA: 3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 47823 | 0.66 | 0.90105 |
Target: 5'- aUGGGCuCGGGcUGC-CAG-AGCGcGGCUCu -3' miRNA: 3'- -ACCUG-GUCC-ACGaGUCaUCGU-CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 132758 | 0.67 | 0.897144 |
Target: 5'- gGGGCCGGaUGCcgCGGUcccgcacggucgcuGCAGGCUCg -3' miRNA: 3'- aCCUGGUCcACGa-GUCAu-------------CGUCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 11428 | 0.67 | 0.894492 |
Target: 5'- aGGACCAGGccaaggugGCcaaGGUGGCGGccCUCa -3' miRNA: 3'- aCCUGGUCCa-------CGag-UCAUCGUCu-GAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 64241 | 0.67 | 0.894492 |
Target: 5'- cUGGGCCGGG-GCgggAGgGGCGuGGCUCg -3' miRNA: 3'- -ACCUGGUCCaCGag-UCaUCGU-CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 38267 | 0.67 | 0.880678 |
Target: 5'- cUGGcuaagcACCuAGG-GCUCuGUGGCAGACa- -3' miRNA: 3'- -ACC------UGG-UCCaCGAGuCAUCGUCUGag -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 48339 | 0.67 | 0.86596 |
Target: 5'- gUGGGCCAGGcGUcCAGUcuggccAGCGGGC-Cg -3' miRNA: 3'- -ACCUGGUCCaCGaGUCA------UCGUCUGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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