miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28733 3' -55.4 NC_006146.1 + 57822 0.66 0.930227
Target:  5'- cGaGGCCGGGUGCUCcaaccuccaGGCAGAgaCa -3'
miRNA:   3'- aC-CUGGUCCACGAGuca------UCGUCUgaG- -5'
28733 3' -55.4 NC_006146.1 + 108408 0.66 0.930227
Target:  5'- aGGGCCAGGUGCUgc-UGGCAcGAg-- -3'
miRNA:   3'- aCCUGGUCCACGAgucAUCGU-CUgag -5'
28733 3' -55.4 NC_006146.1 + 61974 0.66 0.930227
Target:  5'- gGGGCCguugAGGcccacgucaccUGCUCGGUcgcuGCuGACUCg -3'
miRNA:   3'- aCCUGG----UCC-----------ACGAGUCAu---CGuCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 167762 0.66 0.924878
Target:  5'- gGGGCCGGGUGggCGc--GCAuGGCUCg -3'
miRNA:   3'- aCCUGGUCCACgaGUcauCGU-CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 168354 0.66 0.924878
Target:  5'- gUGGgcugaagaACCAGGUGCcCcgAGUAGguGuCUCg -3'
miRNA:   3'- -ACC--------UGGUCCACGaG--UCAUCguCuGAG- -5'
28733 3' -55.4 NC_006146.1 + 99791 0.66 0.924878
Target:  5'- gGGGCgCAGGUGuCUCGGaagGGCAccGGCg- -3'
miRNA:   3'- aCCUG-GUCCAC-GAGUCa--UCGU--CUGag -5'
28733 3' -55.4 NC_006146.1 + 130953 0.66 0.919285
Target:  5'- gGGACCcgGGGUGCU----GGCGGAaCUCc -3'
miRNA:   3'- aCCUGG--UCCACGAgucaUCGUCU-GAG- -5'
28733 3' -55.4 NC_006146.1 + 156247 0.66 0.913449
Target:  5'- gUGGACgGGGUGCcgUGGUugGGCAGcaccaugaGCUCc -3'
miRNA:   3'- -ACCUGgUCCACGa-GUCA--UCGUC--------UGAG- -5'
28733 3' -55.4 NC_006146.1 + 141488 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 144566 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 147644 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 156877 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 153799 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 150721 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 47823 0.66 0.90105
Target:  5'- aUGGGCuCGGGcUGC-CAG-AGCGcGGCUCu -3'
miRNA:   3'- -ACCUG-GUCC-ACGaGUCaUCGU-CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 132758 0.67 0.897144
Target:  5'- gGGGCCGGaUGCcgCGGUcccgcacggucgcuGCAGGCUCg -3'
miRNA:   3'- aCCUGGUCcACGa-GUCAu-------------CGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 11428 0.67 0.894492
Target:  5'- aGGACCAGGccaaggugGCcaaGGUGGCGGccCUCa -3'
miRNA:   3'- aCCUGGUCCa-------CGag-UCAUCGUCu-GAG- -5'
28733 3' -55.4 NC_006146.1 + 64241 0.67 0.894492
Target:  5'- cUGGGCCGGG-GCgggAGgGGCGuGGCUCg -3'
miRNA:   3'- -ACCUGGUCCaCGag-UCaUCGU-CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 38267 0.67 0.880678
Target:  5'- cUGGcuaagcACCuAGG-GCUCuGUGGCAGACa- -3'
miRNA:   3'- -ACC------UGG-UCCaCGAGuCAUCGUCUGag -5'
28733 3' -55.4 NC_006146.1 + 48339 0.67 0.86596
Target:  5'- gUGGGCCAGGcGUcCAGUcuggccAGCGGGC-Cg -3'
miRNA:   3'- -ACCUGGUCCaCGaGUCA------UCGUCUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.