Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28734 | 3' | -44.3 | NC_006146.1 | + | 7910 | 0.66 | 0.999999 |
Target: 5'- -------aGGaUAGCAUAUGCUAcCCa -3' miRNA: 3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7645 | 0.66 | 0.999999 |
Target: 5'- -------aGGaUAGCAUAUGCUAcCCa -3' miRNA: 3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7832 | 0.66 | 0.999999 |
Target: 5'- -------aGGaUAGCAUAUGCUAcCCa -3' miRNA: 3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7966 | 0.67 | 0.999997 |
Target: 5'- ----------aUAGCAUAUGCUAUCCc -3' miRNA: 3'- uaaaucaacccAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 154344 | 0.67 | 0.999997 |
Target: 5'- ----cGUUGuGGcacUGGUAgAUGCUGUCCa -3' miRNA: 3'- uaaauCAAC-CC---AUCGUaUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 69677 | 0.67 | 0.999995 |
Target: 5'- ----uGggGGGUGGCAUAUcugaagGCUG-CCa -3' miRNA: 3'- uaaauCaaCCCAUCGUAUA------CGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 162784 | 0.67 | 0.999995 |
Target: 5'- -------aGGaUAGCAgAUGCUAUCCa -3' miRNA: 3'- uaaaucaaCCcAUCGUaUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 161616 | 0.67 | 0.999995 |
Target: 5'- --------cGGcAGUAUGUGCUAUCCa -3' miRNA: 3'- uaaaucaacCCaUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 139105 | 0.67 | 0.999987 |
Target: 5'- ---gAGUUGGGUuGCGUggGgUGUCa -3' miRNA: 3'- uaaaUCAACCCAuCGUAuaCgAUAGg -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 64456 | 0.67 | 0.999987 |
Target: 5'- -----cUUGGGUGGC----GCUGUCCu -3' miRNA: 3'- uaaaucAACCCAUCGuauaCGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 8094 | 0.68 | 0.999964 |
Target: 5'- ------cUGGaUAGCAUAUGCUAcCCg -3' miRNA: 3'- uaaaucaACCcAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 152895 | 0.68 | 0.999964 |
Target: 5'- -------aGGGUGGCG-AUGCcGUCCa -3' miRNA: 3'- uaaaucaaCCCAUCGUaUACGaUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163390 | 0.69 | 0.999934 |
Target: 5'- --cUAGUguaaccuuuUGa-UAGCAUAUGCUAUCCu -3' miRNA: 3'- uaaAUCA---------ACccAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 8117 | 0.69 | 0.999934 |
Target: 5'- -cUUAucUGGaUAGCAUcUGCUAUCCu -3' miRNA: 3'- uaAAUcaACCcAUCGUAuACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163122 | 0.71 | 0.999172 |
Target: 5'- --cUAGcuuucGGUAGCAUAUGCUAcCCu -3' miRNA: 3'- uaaAUCaac--CCAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163311 | 0.71 | 0.999172 |
Target: 5'- aAUUUAGgUGGGUAGUGUAUaCUAUCn -3' miRNA: 3'- -UAAAUCaACCCAUCGUAUAcGAUAGg -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 43977 | 0.71 | 0.998739 |
Target: 5'- ----uGgcGGGUAaUAUAUGCUAUCCu -3' miRNA: 3'- uaaauCaaCCCAUcGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 9310 | 0.72 | 0.998127 |
Target: 5'- ---cGGccGGGcAGCAUuUGCUAUCCg -3' miRNA: 3'- uaaaUCaaCCCaUCGUAuACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163175 | 0.72 | 0.998127 |
Target: 5'- --cUAGcuuucGGUAGCAUAUGCUuUCCu -3' miRNA: 3'- uaaAUCaac--CCAUCGUAUACGAuAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 162966 | 0.76 | 0.976177 |
Target: 5'- --aUAGc-GGGUAGCAUAUaCUAUCCu -3' miRNA: 3'- uaaAUCaaCCCAUCGUAUAcGAUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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