miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28734 3' -44.3 NC_006146.1 + 7910 0.66 0.999999
Target:  5'- -------aGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 7645 0.66 0.999999
Target:  5'- -------aGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 7832 0.66 0.999999
Target:  5'- -------aGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 7966 0.67 0.999997
Target:  5'- ----------aUAGCAUAUGCUAUCCc -3'
miRNA:   3'- uaaaucaacccAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 154344 0.67 0.999997
Target:  5'- ----cGUUGuGGcacUGGUAgAUGCUGUCCa -3'
miRNA:   3'- uaaauCAAC-CC---AUCGUaUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 69677 0.67 0.999995
Target:  5'- ----uGggGGGUGGCAUAUcugaagGCUG-CCa -3'
miRNA:   3'- uaaauCaaCCCAUCGUAUA------CGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 162784 0.67 0.999995
Target:  5'- -------aGGaUAGCAgAUGCUAUCCa -3'
miRNA:   3'- uaaaucaaCCcAUCGUaUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 161616 0.67 0.999995
Target:  5'- --------cGGcAGUAUGUGCUAUCCa -3'
miRNA:   3'- uaaaucaacCCaUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 139105 0.67 0.999987
Target:  5'- ---gAGUUGGGUuGCGUggGgUGUCa -3'
miRNA:   3'- uaaaUCAACCCAuCGUAuaCgAUAGg -5'
28734 3' -44.3 NC_006146.1 + 64456 0.67 0.999987
Target:  5'- -----cUUGGGUGGC----GCUGUCCu -3'
miRNA:   3'- uaaaucAACCCAUCGuauaCGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 8094 0.68 0.999964
Target:  5'- ------cUGGaUAGCAUAUGCUAcCCg -3'
miRNA:   3'- uaaaucaACCcAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 152895 0.68 0.999964
Target:  5'- -------aGGGUGGCG-AUGCcGUCCa -3'
miRNA:   3'- uaaaucaaCCCAUCGUaUACGaUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163390 0.69 0.999934
Target:  5'- --cUAGUguaaccuuuUGa-UAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUCA---------ACccAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 8117 0.69 0.999934
Target:  5'- -cUUAucUGGaUAGCAUcUGCUAUCCu -3'
miRNA:   3'- uaAAUcaACCcAUCGUAuACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163122 0.71 0.999172
Target:  5'- --cUAGcuuucGGUAGCAUAUGCUAcCCu -3'
miRNA:   3'- uaaAUCaac--CCAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 163311 0.71 0.999172
Target:  5'- aAUUUAGgUGGGUAGUGUAUaCUAUCn -3'
miRNA:   3'- -UAAAUCaACCCAUCGUAUAcGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 43977 0.71 0.998739
Target:  5'- ----uGgcGGGUAaUAUAUGCUAUCCu -3'
miRNA:   3'- uaaauCaaCCCAUcGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 9310 0.72 0.998127
Target:  5'- ---cGGccGGGcAGCAUuUGCUAUCCg -3'
miRNA:   3'- uaaaUCaaCCCaUCGUAuACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163175 0.72 0.998127
Target:  5'- --cUAGcuuucGGUAGCAUAUGCUuUCCu -3'
miRNA:   3'- uaaAUCaac--CCAUCGUAUACGAuAGG- -5'
28734 3' -44.3 NC_006146.1 + 162966 0.76 0.976177
Target:  5'- --aUAGc-GGGUAGCAUAUaCUAUCCu -3'
miRNA:   3'- uaaAUCaaCCCAUCGUAUAcGAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.