miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28734 5' -47.8 NC_006146.1 + 7505 0.66 0.999351
Target:  5'- -aGGaUAGCAUAUGCUAUCaaaaGGUUa -3'
miRNA:   3'- aaCCcAUCGUAUACGAUAGgg--UUAAa -5'
28734 5' -47.8 NC_006146.1 + 37129 0.66 0.999351
Target:  5'- gUGGGUAGCugccucgaGUGUGCcGUgCCGGUc- -3'
miRNA:   3'- aACCCAUCG--------UAUACGaUAgGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 15364 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 12285 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 18442 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 21520 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 24598 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 27676 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 161571 0.66 0.999
Target:  5'- gUUGGGUAGUAUGUaCUA-CCCGc--- -3'
miRNA:   3'- -AACCCAUCGUAUAcGAUaGGGUuaaa -5'
28734 5' -47.8 NC_006146.1 + 9314 0.66 0.999
Target:  5'- -cGGGcAGCAUuUGCUAUCCg----- -3'
miRNA:   3'- aaCCCaUCGUAuACGAUAGGguuaaa -5'
28734 5' -47.8 NC_006146.1 + 8067 0.66 0.998771
Target:  5'- -aGGaUAGCAUAUGCUA-CCUAAc-- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 43955 0.67 0.997797
Target:  5'- -cGGGaUAGUGUAUGCUA-CCUGAUg- -3'
miRNA:   3'- aaCCC-AUCGUAUACGAUaGGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 163406 0.68 0.994788
Target:  5'- ----aUAGCAUAUGCUAUCCUAc--- -3'
miRNA:   3'- aacccAUCGUAUACGAUAGGGUuaaa -5'
28734 5' -47.8 NC_006146.1 + 43980 0.69 0.990495
Target:  5'- -cGGGUAaUAUAUGCUAUCCUcAUa- -3'
miRNA:   3'- aaCCCAUcGUAUACGAUAGGGuUAaa -5'
28734 5' -47.8 NC_006146.1 + 7832 0.69 0.989075
Target:  5'- -aGGaUAGCAUAUGCUA-CCCAc--- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUuaaa -5'
28734 5' -47.8 NC_006146.1 + 80097 0.69 0.987496
Target:  5'- cUGGGUGGCGacacuggGUGCUcaccucUCCCAGUg- -3'
miRNA:   3'- aACCCAUCGUa------UACGAu-----AGGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 7645 0.71 0.964368
Target:  5'- -aGGaUAGCAUAUGCUA-CCCAAc-- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 7910 0.71 0.964368
Target:  5'- -aGGaUAGCAUAUGCUA-CCCAGa-- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 163318 0.73 0.932549
Target:  5'- gUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- aACCCAUCGUAUAcGAUAGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 163102 0.73 0.926887
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AACCCAUCGUAUAcGAUAGGGUUaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.