miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28736 3' -46.1 NC_006146.1 + 7904 0.66 0.999982
Target:  5'- -aAAGcuaGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uaUUCaagCCcAUCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 161615 0.66 0.999975
Target:  5'- ------cCGGc-AGUAUGUGCUAUCCa -3'
miRNA:   3'- uauucaaGCCcaUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 18940 0.66 0.999975
Target:  5'- -cGAGgaCGGGaagGGCAUGUGgUGcgCCa -3'
miRNA:   3'- uaUUCaaGCCCa--UCGUAUACgAUa-GG- -5'
28736 3' -46.1 NC_006146.1 + 17790 0.66 0.999975
Target:  5'- cAUGAGgguccCGGGcuccgagAGCAUGUGCUAcUCg -3'
miRNA:   3'- -UAUUCaa---GCCCa------UCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 43949 0.67 0.999937
Target:  5'- -aAGGcgCGGGaUAGUGUAUGCUAc-- -3'
miRNA:   3'- uaUUCaaGCCC-AUCGUAUACGAUagg -5'
28736 3' -46.1 NC_006146.1 + 7501 0.67 0.999937
Target:  5'- --uAGUa-GGaUAGCAUAUGCUAUCa -3'
miRNA:   3'- uauUCAagCCcAUCGUAUACGAUAGg -5'
28736 3' -46.1 NC_006146.1 + 163401 0.67 0.99989
Target:  5'- ----uUUUGa-UAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauucAAGCccAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 77417 0.68 0.999691
Target:  5'- aGUGAGUUCuGGUAGgAgacuCUAUCCa -3'
miRNA:   3'- -UAUUCAAGcCCAUCgUauacGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 152886 0.68 0.999505
Target:  5'- -aAGGUcugcaGGGUGGCG-AUGCcGUCCa -3'
miRNA:   3'- uaUUCAag---CCCAUCGUaUACGaUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163100 0.7 0.998268
Target:  5'- --uAGUU-GGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- uauUCAAgCCCAUCGUAUAcGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163206 0.7 0.998268
Target:  5'- --uAGUU-GGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- uauUCAAgCCCAUCGUAUAcGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163153 0.7 0.998268
Target:  5'- --uAGUU-GGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- uauUCAAgCCCAUCGUAUAcGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163127 0.71 0.995803
Target:  5'- ----uUUC-GGUAGCAUAUGCUAcCCu -3'
miRNA:   3'- uauucAAGcCCAUCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 163180 0.72 0.992211
Target:  5'- ----uUUC-GGUAGCAUAUGCUuUCCu -3'
miRNA:   3'- uauucAAGcCCAUCGUAUACGAuAGG- -5'
28736 3' -46.1 NC_006146.1 + 67440 0.72 0.988017
Target:  5'- gGUAAGUcucgCGGGUGaaguaggugcGCAUGUGCUccgcgaagccccgGUCCa -3'
miRNA:   3'- -UAUUCAa---GCCCAU----------CGUAUACGA-------------UAGG- -5'
28736 3' -46.1 NC_006146.1 + 43973 0.72 0.98652
Target:  5'- cUGAuggCGGGUAaUAUAUGCUAUCCu -3'
miRNA:   3'- uAUUcaaGCCCAUcGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 9310 0.72 0.98652
Target:  5'- ---cGgcCGGGcAGCAUuUGCUAUCCg -3'
miRNA:   3'- uauuCaaGCCCaUCGUAuACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162751 0.73 0.984692
Target:  5'- uAUAGGUUUGGaUAGCAUAcGCUA-CCa -3'
miRNA:   3'- -UAUUCAAGCCcAUCGUAUaCGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 7614 0.73 0.978071
Target:  5'- -----aUUGGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uauucaAGCCC-AUCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 9737 0.76 0.930468
Target:  5'- -----cUgGGGUAGUAUAUGCUAUCa -3'
miRNA:   3'- uauucaAgCCCAUCGUAUACGAUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.