Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28736 | 5' | -44.2 | NC_006146.1 | + | 88271 | 0.66 | 0.999999 |
Target: 5'- -aAGGaugGGUAUGUGCUggCCUggGAUAUg -3' miRNA: 3'- aaUCCa--UCGUAUACGAuaGGA--UUAUA- -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 112177 | 0.66 | 0.999999 |
Target: 5'- --uGGUGGCAUuggugGUGCUGguggCCUGGg-- -3' miRNA: 3'- aauCCAUCGUA-----UACGAUa---GGAUUaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 162214 | 0.66 | 0.999999 |
Target: 5'- -cAGGUGGCucagauugGUGCgAUCCUGGa-- -3' miRNA: 3'- aaUCCAUCGua------UACGaUAGGAUUaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 49279 | 0.66 | 0.999998 |
Target: 5'- -gAGGUGGUcUAUGCUcUCCUcgaaggaggaGAUGUa -3' miRNA: 3'- aaUCCAUCGuAUACGAuAGGA----------UUAUA- -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 63244 | 0.66 | 0.999997 |
Target: 5'- -cGGGgGGCAUGUGaacGUCCUGAg-- -3' miRNA: 3'- aaUCCaUCGUAUACga-UAGGAUUaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 67459 | 0.66 | 0.999992 |
Target: 5'- gUAGGUGcGCAUGUGCUccgcgaagccccgGUCCa----- -3' miRNA: 3'- aAUCCAU-CGUAUACGA-------------UAGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 7935 | 0.67 | 0.99999 |
Target: 5'- aUUAGGaUAGUAUAUGCUAcCCg----- -3' miRNA: 3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 162864 | 0.67 | 0.99999 |
Target: 5'- uUGGaUAGCAUAUaCUAUCUUAAUAUu -3' miRNA: 3'- aAUCcAUCGUAUAcGAUAGGAUUAUA- -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 18365 | 0.67 | 0.999989 |
Target: 5'- --uGGUGGCA--UGCUcacccugGUCCUGGUGg -3' miRNA: 3'- aauCCAUCGUauACGA-------UAGGAUUAUa -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 64456 | 0.67 | 0.999979 |
Target: 5'- cUUGGGUGGC----GCUGUCCUGc--- -3' miRNA: 3'- -AAUCCAUCGuauaCGAUAGGAUuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 8042 | 0.67 | 0.999971 |
Target: 5'- -aAGaUAGUAUAUGCUAUCCa----- -3' miRNA: 3'- aaUCcAUCGUAUACGAUAGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 161616 | 0.68 | 0.999901 |
Target: 5'- --cGGcAGUAUGUGCUAUCCa----- -3' miRNA: 3'- aauCCaUCGUAUACGAUAGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 9314 | 0.7 | 0.999521 |
Target: 5'- -cGGGcAGCAUuUGCUAUCCggcgGGUAg -3' miRNA: 3'- aaUCCaUCGUAuACGAUAGGa---UUAUa -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 7670 | 0.7 | 0.99924 |
Target: 5'- aUUAGGaUAGCAUAUGCUA-CCg----- -3' miRNA: 3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 7963 | 0.7 | 0.999053 |
Target: 5'- -aAGaUAGCAUAUGCUAUCCcAAUu- -3' miRNA: 3'- aaUCcAUCGUAUACGAUAGGaUUAua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 7908 | 0.71 | 0.998827 |
Target: 5'- cUAGGaUAGCAUAUGCUAcCCa----- -3' miRNA: 3'- aAUCC-AUCGUAUACGAUaGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 7614 | 0.71 | 0.998827 |
Target: 5'- aUUGGGaUAGCAUAUGCUAcCCa----- -3' miRNA: 3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 7642 | 0.71 | 0.997857 |
Target: 5'- aUUAGGaUAGCAUAUGCUAcCCa----- -3' miRNA: 3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 7829 | 0.71 | 0.997857 |
Target: 5'- aUUAGGaUAGCAUAUGCUAcCCa----- -3' miRNA: 3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5' |
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28736 | 5' | -44.2 | NC_006146.1 | + | 43955 | 0.73 | 0.992851 |
Target: 5'- -cGGGaUAGUGUAUGCUA-CCUGAUGg -3' miRNA: 3'- aaUCC-AUCGUAUACGAUaGGAUUAUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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