miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 170690 0.66 0.852948
Target:  5'- gCCCCGGGGAc------CGUCGCGGGGg -3'
miRNA:   3'- -GGGGUCCCUcaugaacGCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 170338 0.66 0.860485
Target:  5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3'
miRNA:   3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 170090 0.67 0.829227
Target:  5'- gCCgGcGGGAGggGCcgGCGCCGCaGGGGg -3'
miRNA:   3'- gGGgU-CCCUCa-UGaaCGCGGUG-CCUC- -5'
28737 3' -58 NC_006146.1 + 169407 0.66 0.860485
Target:  5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3'
miRNA:   3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 168475 0.66 0.860485
Target:  5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3'
miRNA:   3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 167543 0.66 0.860485
Target:  5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3'
miRNA:   3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 162564 1.11 0.001634
Target:  5'- aCCCCAGGGAGUACUUGCGCCACGGAGg -3'
miRNA:   3'- -GGGGUCCCUCAUGAACGCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 161979 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 161912 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 161845 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 161778 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 161745 0.68 0.755339
Target:  5'- gCCCGGGGGuGgcgGCUgagguccgaggggGCGCCuggGCGGGGg -3'
miRNA:   3'- gGGGUCCCU-Ca--UGAa------------CGCGG---UGCCUC- -5'
28737 3' -58 NC_006146.1 + 160123 0.74 0.44145
Target:  5'- cCCUCAGGGGGUAggUG-GCCAgGGGGu -3'
miRNA:   3'- -GGGGUCCCUCAUgaACgCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 157738 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 156360 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 154661 0.66 0.881902
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGu -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 153282 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 153199 0.69 0.711486
Target:  5'- cCCCCAGGc---GCUUGgcCGCCACGGGc -3'
miRNA:   3'- -GGGGUCCcucaUGAAC--GCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 151583 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 150204 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.